>retro_vpac_256
GTGCTCCTGGACCAGATCGCCAACACCACAGTCGGCGGCAACCTCGGCCTGCAGCTGAGCCAGAAGGCGCTCACCACTTT
CCTAGACGTGGTGCTTGTCCGGGGTGCCCACACCCTCAGTGCAATCGGATAGTGACATCACAGTCCTGAGACACCTGGAG
AAGTTGGGTTGCCGCTTAGTCAACCGCCCACAGGGCATTTTAAACTGCATCAACAAATTCTGGATGTCCCAGGAGCTGGC
TGGACATGGGGGTCCCCATGCCAGACACCTTCTCCTATGGTGGGCATGAAGACTTTTCCAAAATGATCGATGAAGCCAAG
CCGCTGGGCTAGCCGGTGGTGATGAAGAGCACGCGCCGACATCAGGGAAAAGCTGTTCTTCTCGCAAGAGCTAAACACCA
CCTCTCAGACATCTGCCATCTGACCCGCCTTGACGTGTCCTACCTGTTCCTGAAGGAGTCCCGTGGAAAGGGTATCCGGG
TGGTGGCTGTTGGGGGCCAGGTGATGGGCTCCATGCTTTGCTGCTGCACAGACAGATGGACGCAGAACAACTGCTCTCTT
GGTGGCCTGAGCGTCATGTGCCCACTGACGGAACAAGGCAAGCAGCTGGCTATCCAGGTGTCCAACATCACGGACACGGA
CTTCTGTGGCATCGATCTCCTCATCATGGACGATGGCTCCTTTTGCGGTGTGTGAGGCAAACACCAACGTCAGTTTCCTA
GCCTTCGACCAGGCGTGCAACTTAGACATGAGTGGGATCATTGCAGACTATACCGTGTCCTTGCTGCCCACCAGGCAGAC
TGGGAGGATGGCCGTCCTCCCAGGACTGTCTAGTCCCAGGGAGAAGGAGCCAGATGGCTGTGCTTCAGCTCAGGGAGTAG
CAGAGAGCGTATACACCATCAACAGTGGGTCCACCTCTAGCGAGACGGAGCCTGAACCGAGAGAGCTG
ORF - retro_vpac_256 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
59.63 % |
Parental protein coverage: |
92.73 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | VVMDEVVLTIEQGNLGLRINGELITAYPQVVVVR-VPTPWVQSDSDITVLRHLEKMGCRLMNRPQAILNC |
| V..D....T...GNLGL.......T....VV.VR.VPTP.VQSDSDITVLRHLEK.GCRL.NRPQ.ILNC |
Retrocopy | VLLDQIANTTVGGNLGLQLSQKALTTFLDVVLVR>VPTPSVQSDSDITVLRHLEKLGCRLVNRPQGILNC |
|
Parental | VNKFWTFQELAGHG-VPLPDTFSYGGHENFAKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADLS |
| .NKFW..QELAGHG.VP.PDTFSYGGHE.F.KMIDEA..L..P.V.K.TR.H.GKAV.LAR.KHHL.D.. |
Retrocopy | INKFWMSQELAGHG>VPMPDTFSYGGHEDFSKMIDEAKPLG*PVVMKSTRRHQGKAVLLARAKHHLSDIC |
|
Parental | HLIRHEAPYLFQKYVKESHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMMCSLSEQGKQLAIQ |
| HL.R....YLF....KES.G...RV..VGG.V.G.ML.C.TD...Q.NCSLGG...MC.L.EQGKQLAIQ |
Retrocopy | HLTRLDVSYLF---LKESRGKGIRVVAVGGQVMGSMLCCCTDRWTQNNCSLGGLSVMCPLTEQGKQLAIQ |
|
Parental | VSNILGMDVCGIDLLMKDDGSFC-VCEANANVGFIAFDKACNLDVAGIIADYAASLLPSGRLTRRMSLLS |
| VSNI...D.CGIDLL..DDGSFC.VCEAN.NV.F.AFD.ACNLD..GIIADY..SLLP..R.T.RM..L. |
Retrocopy | VSNITDTDFCGIDLLIMDDGSFC>VCEANTNVSFLAFDQACNLDMSGIIADYTVSLLPT-RQTGRMAVLP |
|
Parental | VVSTASETSEPELGPPASTAVDNMSASSSSVDSDPETTEREL |
| ..S...E............A.......S.S..S..E...REL |
Retrocopy | GLSSPREKEPDGCASAQGVAESVYTINSGSTSSETEPEPREL |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Vicugna pacos was not studied using RNA-Seq expression data.
Vicugna pacos was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_vpac_256 retrocopy.
Vicugna pacos was not studied using FANTOM5 data.
retro_vpac_256 was not experimentally validated.
Retrocopy orthology:
Vicugna pacos does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
6 retrocopies.