RetrogeneDB ID: | retro_rnor_255 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:248214032..248215196(-) | ||
Located in intron of: | ENSRNOG00000036911 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000036910 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSRNOG00000023814 | ||
Aliases: | None | ||
Description: | Protein Rimklb [Source:UniProtKB/TrEMBL;Acc:D3ZJ79] |
Percent Identity: | 99.39 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GLRINGELISAYPQVVVVRVPTPWVQSDSDITVLRHLEKMGCRLMNRPQAILNCVNKFWTFQELAGHGVP |
GLRINGELISAYPQVVVVRVPTPWVQSDSDITVLRHLEKMGCRLMNRPQAILNCV.KFWTFQELAGHGVP | |
Retrocopy | GLRINGELISAYPQVVVVRVPTPWVQSDSDITVLRHLEKMGCRLMNRPQAILNCVDKFWTFQELAGHGVP |
Parental | LPDTFSYGGHENFSKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADLSHLIRHEAPYLFQKYIKE |
LPDTFSYGGHENFSKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADLSHLIRHEAPYLFQKYIKE | |
Retrocopy | LPDTFSYGGHENFSKMIDEAEVLEFPMVVKNTRGHRGKAVFLARDKHHLADLSHLIRHEAPYLFQKYIKE |
Parental | SHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMMCSLSEQGKQLAIQVSNILGMDVCGIDLLMK |
SHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMMCSLSEQGKQL.IQVSNILGMDVCGIDLLMK | |
Retrocopy | SHGRDVRVIVVGGRVVGTMLRCSTDGRMQSNCSLGGVGMMCSLSEQGKQLDIQVSNILGMDVCGIDLLMK |
Parental | DDGSFCVCEANANVGFIAFDKACNLDVAGIIADYAASLLPAGRLTRRMSLLSVVSTASETSEPELGPPAS |
DDGSFCVCEANANVGFIAFDKACNLDVAGIIADYAASLLPAGRLTRRMSLLSVVSTASETSEPELGPPAS | |
Retrocopy | DDGSFCVCEANANVGFIAFDKACNLDVAGIIADYAASLLPAGRLTRRMSLLSVVSTASETSEPELGPPAS |
Parental | AAVDNMSASSSSVDSDPESTTERELLTKLPGGLFNMNQLLANEIKLLVE |
AAVDNMSASSSSVDSDPESTTERELLTKLPGGLFNMNQLLANEIKLLVE | |
Retrocopy | AAVDNMSASSSSVDSDPESTTERELLTKLPGGLFNMNQLLANEIKLLVE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .93 RPM | 5 .10 RPM |
SRP017611_kidney | 1 .26 RPM | 3 .28 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Homo sapiens | ENSG00000166532 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000000332 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000002201 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000013997 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000011440 | 2 retrocopies | |
Pongo abelii | ENSPPYG00000004244 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000004643 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000023814 | 1 retrocopy |
retro_rnor_255 ,
|
Tarsius syrichta | ENSTSYG00000003996 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000000699 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000003954 | 1 retrocopy |