RetrogeneDB ID: | retro_vpac_289 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_392:72974..73928(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | API5 | ||
Ensembl ID: | ENSVPAG00000012428 | ||
Aliases: | None | ||
Description: | apoptosis inhibitor 5 [Source:HGNC Symbol;Acc:594] |
Percent Identity: | 98.11 % |
Parental protein coverage: | 62.8 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | HKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGE |
HKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGE | |
Retrocopy | HKDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATGE |
Parental | NLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLG-LFSQILQGEDIVRE-AIKFLSTKLKTLP |
NLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLG.LFSQILQGEDIVRE.AIKFLSTKLKTLP | |
Retrocopy | NLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAKGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLP |
Parental | D-VLTKEVEELILTESKKVLEDVTGEEFVLFMKILSG-KSLQTVSGRQQLVELVAEQADLEQTFNPSDPD |
D.VLTKEVEELILTESKKVLEDVTGEEFVLFMKILSG.KSLQTVSGRQQLVELVAEQADLEQTFNPSDPD | |
Retrocopy | DEVLTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPD |
Parental | CVDRLLQCTRQAVPLFSKNVHSTRFATYFCEQVLPNLGSLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKL |
CVDRLLQCTRQA.PLFSKNVHSTRF.TYFCEQVLPNLGSLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKL | |
Retrocopy | CVDRLLQCTRQAFPLFSKNVHSTRFVTYFCEQVLPNLGSLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKL |
Parental | ETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFS |
ETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFS | |
Retrocopy | ETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Cavia porcellus | ENSCPOG00000011993 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000013546 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000008827 | 1 retrocopy | |
Mus musculus | ENSMUSG00000027193 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003345 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000012428 | 1 retrocopy |
retro_vpac_289 ,
|