>retro_vpac_428
GCAAATGAAGGTGAAACGATGTCAGCCAGCCCAGAATACCATTCCTTGGGAATTCTGGTCTTTCAGACCACCAGTTCGGT
TCTAACGATGCGTTACTCTCGGGCTTTAAAAGAGGAGGGGCCTTGTTATCTATTCTGCTCCCGCTGTGCTTGTGCCGAAC
TTTTTAAGATAAGGGCCTGTATTTTGTTAGTCTACAAAGCCAGCAAATGTAGTCCAGGAGGACTGAATCGAATGCTATAT
CACGAAATTCTTAATAAACCAATGGAAACTCTTACACTTGCTATTCCGTCAGGGATACACACTCTTCAGAATAATTTACC
CTATGTGGCACCGTCAGATCTAGATGCAGCTACTTAACCAGGTCACGTATCAGTTGAAAATTCTTACAATGGCATTATTT
TCTGTATCTATGCTTAGTAAAAAAAAAAAATTAGGTGTGGACCAGTGGCTTTCCCTAGTAATTTTGATGACAGGATGTGC
TTTTGTACAGTGGCCCTCAGATTCTCAAGAGCTTGGTTCTAAGGAACTTCCCGCTGGTGCTCAACTTTGTAGGCCTCACG
GCAGTGCTCACAGCATGTTTTTCAAGTGGCTTTGCCGGGGTTTACTTTGAGAAAATCTTAAAAGAAACCAAACAATCAGT
ATGGATAACAAATATTCAACTTAGTTTCCTTGGGAGTATATTTGGATTAATGAGTGTATATATTCATGATGGAGAACAAT
ATCAAAGAATGGTTTCCTTCAGGTATATAACTGGCTGACCTGAACAGATGTTAGTCTTCAGACACTGGGAGGCCTCGTAA
TAGCTCCTGTTATTAAGTATGTGGGTAATATTTTAAAAGGATTTGCAACCTCTTTGTCCATAATTTTATCAACACTGATA
TCCTATTTTGGGCTACAAGATTTTGTGCCAACCAGTGTCTTTTCCCTTGGAGCCATCCTTGTAATAACAGCTACTTTCCT
ATACGGTTATGATCCCAAACCTGCAGGAAATCCCACTAAA
ORF - retro_vpac_428 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
80.95 % |
Parental protein coverage: |
90.44 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
3 |
Retrocopy - Parental Gene Alignment:
Parental | ANEDKTMSANLKYLSLGILVFQTTSLVLTMRYSRTLKEEGPRYLSSTAVVVAELLKIMACILLVYKDSKC |
| ANE..TMSA...Y.SLGILVFQTTS.VLTMRYSR.LKEEGP.YL.......AEL.KI.ACILLVYK.SKC |
Retrocopy | ANEGETMSASPEYHSLGILVFQTTSSVLTMRYSRALKEEGPCYLFCSRCACAELFKIRACILLVYKASKC |
|
Parental | SLRGLNRILHDEILNKPMETLKLAIPSGIYTLQNNLLYVALSNLDAAT-YQVTYQLKILTTALFSVSMLS |
| S..GLNR.L..EILNKPMETL.LAIPSGI.TLQNNL.YVA.S.LDAAT..QVTYQLKILT.ALFSVSMLS |
Retrocopy | SPGGLNRMLYHEILNKPMETLTLAIPSGIHTLQNNLPYVAPSDLDAAT>NQVTYQLKILTMALFSVSMLS |
|
Parental | --KKLGVYQWLSLVILMTGVAFVQWPSDSQELDSKELSAGSQ-FVGLMAVLTACFSSGFAGVYFEKILKE |
| ....LGV.QWLSLVILMTG.AFVQWPSDSQEL.SKEL.AG.Q.FVGL.AVLTACFSSGFAGVYFEKILKE |
Retrocopy | XXXXLGVDQWLSLVILMTGCAFVQWPSDSQELGSKELPAGAQ>FVGLTAVLTACFSSGFAGVYFEKILKE |
|
Parental | TKQSVWIRNIQLGFFGSIFGLMGVYIYDGE-LVSKNGFFQGYNRLTWIVVILQALGGLVIAAVIKYADNI |
| TKQSVWI.NIQL.F.GSIFGLM.VYI.DGE...SKNGF.Q.YN.LT...V.LQ.LGGLVIA.VIKY..NI |
Retrocopy | TKQSVWITNIQLSFLGSIFGLMSVYIHDGE<TISKNGFLQVYNWLT*TDVSLQTLGGLVIAPVIKYVGNI |
|
Parental | LKGFATSLSIILSTLISYFWLQDFVPTSVFFLGAILVITATFLYGYDPKPAGNPTK |
| LKGFATSLSIILSTLISYF.LQDFVPTSVF.LGAILVITATFLYGYDPKPAGNPTK |
Retrocopy | LKGFATSLSIILSTLISYFGLQDFVPTSVFSLGAILVITATFLYGYDPKPAGNPTK |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Vicugna pacos was not studied using RNA-Seq expression data.
Vicugna pacos was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_vpac_428 retrocopy.
Vicugna pacos was not studied using FANTOM5 data.
retro_vpac_428 was not experimentally validated.
Retrocopy orthology:
Vicugna pacos does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
4 parental genes, and
5 retrocopies.