RetrogeneDB ID:

retro_chof_37

Retrocopy
location
Organism:Sloth (Choloepus hoffmanni)
Coordinates:scaffold_240559:3563..4202(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSCHOG00000001477
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSCHOG00000000695
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_chof_37
GTCACGTATCAGTTGAAAATTCTTACAACGGCATTATTTCCTGTGTCTATGCTTGGTAAAAAATTAGATGTGTACCAGTG
GTTGTCCCTAGTAATTCTGATGACAGGAGTTGCTTTTGTTCAGTGGCCTTCAGATTCACAAGAACTTGATTCTAAGGAAC
TCTCAGCTGGCTCTCAATTTGTAGGACTCATGGCAGTTCTTACAGCGTGTTTTTCAAGTGGCTTTGCTGCAGTTTACTTT
GAGAAAATTTTAAAAGAAACCAAGCAATCTGTGTGGATAAGAAACATTCAGCTTGGTTTCTTTGGGAGTATATTTGGATT
AATGGGTGTATACGTTTATGATGGAGAATTGGTATCAAAGAATGGATTTTTTCAGGGATATAATAGACTGACCTGGATAG
TAGTTGTTCTTCAGGCACTTGGAGGACTTGTAATAGCTGCTGTTATTAAGTATGCAGATAATATTTTAAAAGGATTTGCA
ACTTCATTATCCTTAATATTATCAACACTGATATCCTATTTTTGGCTACAAGATTTTGTGCCAACCAGTGTCTTTTTCCT
TGGAGCCATCCTTGTAATAACAGCTACTTTCCTATATGGTTATGATCCTAAACCTACAGGAAATCCCACTAAAGCATAG

ORF - retro_chof_37 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.15 %
Parental protein coverage: 57.42 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalVTYQLKILTTALFSVSMLGKKLGVYQWLSLVILMTGVAFVQWRSDSQELDSKDLSAGFQLVGIMTIDTAC
VTYQLKILTTALF.VSMLGKKL.VYQWLSLVILMTGVAFVQW.SDSQELDSK.LSAG.Q.VG.M...TAC
RetrocopyVTYQLKILTTALFPVSMLGKKLDVYQWLSLVILMTGVAFVQWPSDSQELDSKELSAGSQFVGLMAVLTAC
ParentalFSSGFGVL--EKLLNATKQSR-TRNIQLRFFGSIFGLMGVYVYDGELVSKNGFFQGYNRLTWIVVVLQAL
FSSGF.....EK.L..TKQS...RNIQL.FFGSIFGLMGVYVYDGELVSKNGFFQGYNRLTWIVVVLQAL
RetrocopyFSSGFAAVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYVYDGELVSKNGFFQGYNRLTWIVVVLQAL
ParentalGGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTSVFFLGAILVITATFLYGYDPKPTGNPT
GGLVIAAVIKYADNILKGFATSLS.ILSTLISYFWLQDFVPTSVFFLGAILVITATFLYGYDPKPTGNPT
RetrocopyGGLVIAAVIKYADNILKGFATSLSLILSTLISYFWLQDFVPTSVFFLGAILVITATFLYGYDPKPTGNPT
ParentalKA
KA
RetrocopyKA

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Choloepus hoffmanni was not studied using RNA-Seq expression data.
Choloepus hoffmanni was not studied using ChIP-Seq data.
Choloepus hoffmanni was not studied using EST data.
Choloepus hoffmanni was not studied using FANTOM5 data.
retro_chof_37 was not experimentally validated.

Retrocopy orthology:
Choloepus hoffmanni does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 5 parental genes, and 7 retrocopies.

Species Parental gene accession Retrocopies number
Choloepus hoffmanni ENSCHOG00000000695 1 retrocopy
retro_chof_37 ,
Myotis lucifugus ENSMLUG000000011472 retrocopies
Oryctolagus cuniculus ENSOCUG000000155382 retrocopies
Tupaia belangeri ENSTBEG000000041281 retrocopy
Vicugna pacos ENSVPAG000000010291 retrocopy



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