RetrogeneDB ID: | retro_chof_37 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_240559:3563..4202(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCHOG00000001477 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCHOG00000000695 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.15 % |
Parental protein coverage: | 57.42 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VTYQLKILTTALFSVSMLGKKLGVYQWLSLVILMTGVAFVQWRSDSQELDSKDLSAGFQLVGIMTIDTAC |
VTYQLKILTTALF.VSMLGKKL.VYQWLSLVILMTGVAFVQW.SDSQELDSK.LSAG.Q.VG.M...TAC | |
Retrocopy | VTYQLKILTTALFPVSMLGKKLDVYQWLSLVILMTGVAFVQWPSDSQELDSKELSAGSQFVGLMAVLTAC |
Parental | FSSGFGVL--EKLLNATKQSR-TRNIQLRFFGSIFGLMGVYVYDGELVSKNGFFQGYNRLTWIVVVLQAL |
FSSGF.....EK.L..TKQS...RNIQL.FFGSIFGLMGVYVYDGELVSKNGFFQGYNRLTWIVVVLQAL | |
Retrocopy | FSSGFAAVYFEKILKETKQSVWIRNIQLGFFGSIFGLMGVYVYDGELVSKNGFFQGYNRLTWIVVVLQAL |
Parental | GGLVIAAVIKYADNILKGFATSLSIILSTLISYFWLQDFVPTSVFFLGAILVITATFLYGYDPKPTGNPT |
GGLVIAAVIKYADNILKGFATSLS.ILSTLISYFWLQDFVPTSVFFLGAILVITATFLYGYDPKPTGNPT | |
Retrocopy | GGLVIAAVIKYADNILKGFATSLSLILSTLISYFWLQDFVPTSVFFLGAILVITATFLYGYDPKPTGNPT |
Parental | KA |
KA | |
Retrocopy | KA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000695 | 1 retrocopy |
retro_chof_37 ,
|
Myotis lucifugus | ENSMLUG00000001147 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000015538 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000004128 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000001029 | 1 retrocopy |