RetrogeneDB ID: | retro_vpac_433 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_182987:242..767(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSVPAG00000004397 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.23 % |
Parental protein coverage: | 52.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KSVDWTEKGYVTPIKNQGQCGSCWAFSATGALEGQMF-RKTGKLVSLSEQNLVDCSRAQGNQGCNGGLMD |
.SV.WTEKGYV.P.KNQGQCGSC.AFSATGA..GQ.F..KTGKLVSLSEQNLVDCSR.QGN.GC.GGLMD | |
Retrocopy | QSVAWTEKGYVIPVKNQGQCGSCRAFSATGAPAGQVF<LKTGKLVSLSEQNLVDCSRPQGNKGCSGGLMD |
Parental | NAFLYVKDNGGLDSEESYPYLARDTNNCNYRPECSAANDTGFVDIPQREKALMKAVASVGPISVAIDAGH |
NAF..VKDNGGL.SEES.P.LARDTN.CNY.PECSAANDTGF.DI.QREKALM.AVASVGPISVA.DAGH | |
Retrocopy | NAFQGVKDNGGLSSEES*PCLARDTNSCNYKPECSAANDTGFADICQREKALMEAVASVGPISVATDAGH |
Parental | SSFQFYKSGIYYEPNCSSKDLDHGV-LVVGYGFEGTD |
.S.QF..SG.Y..P.C.SKDLDHGV.LVVGYG.EGTD | |
Retrocopy | ASLQFCGSGTYHKPDCNSKDLDHGV>LVVGYGSEGTD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000001149 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007977 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002168 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014293 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016209 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000002844 | 1 retrocopy | |
Petromyzon marinus | ENSPMAG00000003453 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000004397 | 1 retrocopy |
retro_vpac_433 ,
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