RetrogeneDB ID: | retro_pmar_7 | ||
Retrocopylocation | Organism: | Lamprey (Petromyzon marinus) | |
Coordinates: | GL499136:453..1347(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSPMAG00000010258 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSPMAG00000003453 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 80.27 % |
Parental protein coverage: | 99.66 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | QNEEGWRRMIWEQNLKKIAVHNLEHSMGKHTWRMGMNRFGDMTGEEFQQVMLGFRGWNGTSKAPRGATFM |
QNEEGWRRMIWE.NLKKIAVHNLEHSMGKHTWRMGMNRFGDMT.EEFQ..MLG.RG.N.TSKA.RGATFM | |
Retrocopy | QNEEGWRRMIWEKNLKKIAVHNLEHSMGKHTWRMGMNRFGDMTKEEFQHTMLGLRGSNDTSKASRGATFM |
Parental | APAFFEAPESVDWRKQGYVTDVKNQGDCGSCWSFSTTGSLEGQHKRKTGVLVSLSEQNLVDCSSTEGNYG |
APAFF.APESVDWRKQGYVTDVK.QGDCGSCW.FSTTGSLEGQHKRKTGVLVSLSEQNLVDCSS.EGN.G | |
Retrocopy | APAFFKAPESVDWRKQGYVTDVKDQGDCGSCWAFSTTGSLEGQHKRKTGVLVSLSEQNLVDCSSAEGNNG |
Parental | CNGGLMINAFNYIKKNGGIDSEESYPYKGQGVETCKYNPKNKAAEVTGYVEIPEGDEEALKNAVASVGPV |
C.GGLM..AF.YIKKNGGIDSE.SYPY.....E.CKYNPKNKAAE.TG.V.IP.G.EEALKNAVASVGPV | |
Retrocopy | CKGGLMDLAFTYIKKNGGIDSEASYPYTAKD-ENCKYNPKNKAAEDTGFVDIPSGNEEALKNAVASVGPV |
Parental | SVAIDASLNSFLYYISGIYKDKLCSHIINHAVLVVGYGVDEKGDKFWLVKNSWGVQWGEKGYVRMARDDN |
S..IDASL.SF..Y.SGIY.D..CS....H.VLVVGYGVD....KFW.VKNSWG..WG..GY..MARD.. | |
Retrocopy | SIGIDASLESFQLYSSGIYSDSDCSNNLDHGVLVVGYGVDDDERKFWIVKNSWGTKWGDHGYILMARDKD |
Parental | NLCGIAVTASYPLV |
NLCGIA..ASYPLV | |
Retrocopy | NLCGIATAASYPLV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000001149 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000007548 | 8 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000012037 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000019810 | 1 retrocopy | |
Echinops telfairi | ENSETEG00000007977 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000002168 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000014293 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000016209 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000003975 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000025440 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000013861 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000002844 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000001349 | 2 retrocopies | |
Ochotona princeps | ENSOPRG00000001030 | 2 retrocopies | |
Petromyzon marinus | ENSPMAG00000003453 | 1 retrocopy |
retro_pmar_7 ,
|
Tupaia belangeri | ENSTBEG00000016406 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000002858 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004397 | 1 retrocopy |