RetrogeneDB ID: | retro_vpac_486 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_240154:3..715(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS3A | ||
Ensembl ID: | ENSVPAG00000004235 | ||
Aliases: | None | ||
Description: | ribosomal protein S3A [Source:HGNC Symbol;Acc:10421] |
Percent Identity: | 78.66 % |
Parental protein coverage: | 90.15 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | AVGKNKRLTKGGKKGAKKKVVDPFSKKDWYDVKAPAMFNIRNVGKTLVTRTQGTKIASDGLKGRVFEVSL |
AV...K.LTKGGKKGAKKKVVD.FSKKDWYDVK.PAMF..R.VGKTL..RTQG.KIASD.LKGRVFEV.L | |
Retrocopy | AVSNGKSLTKGGKKGAKKKVVDSFSKKDWYDVKTPAMFGVRSVGKTLLMRTQGIKIASDSLKGRVFEVTL |
Parental | ADLQNDEVAFRKFKLITEDVQGKNCLTNFHGMDLTRDKMCSMV-KKWQTMIEAHVDVKTTDGYLLRLFCV |
.DLQND.V.FRKFKLI.EDVQGK.CL..FHGMDLTRD.MC.MV.KKWQTM.EAHVDVKTTD.YLL.L.CV | |
Retrocopy | GDLQNDKVPFRKFKLIAEDVQGKSCLMHFHGMDLTRDEMCFMV>KKWQTMMEAHVDVKTTDNYLLHL-CV |
Parental | GFTKKRNNQIRKTSYAQHQQVRQIRKKMMEIMTREVQTNDLKEVVNKLIPDSIGKDIEKACQSIYPLHDV |
GFTKKRNN.I.KTSYAQHQ.V.QIRKKM...MTR.VQTN.LKEVVNKLIPDSIGKDI.KAC.SIY..... | |
Retrocopy | GFTKKRNNPIQKTSYAQHQWV*QIRKKMV*TMTRAVQTNHLKEVVNKLIPDSIGKDIKKAC*SIYLPSVI |
Parental | FVRKVKMLKKPKFELGKLMELHGEGSSSG |
FVRK.K.LKKP..ELGKL.E.HG.GSSSG | |
Retrocopy | FVRKAKVLKKPECELGKLLEPHGDGSSSG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000018425 | 11 retrocopies | |
Bos taurus | ENSBTAG00000009908 | 3 retrocopies | |
Canis familiaris | ENSCAFG00000007990 | 7 retrocopies | |
Callithrix jacchus | ENSCJAG00000002268 | 7 retrocopies | |
Gorilla gorilla | ENSGGOG00000003182 | 2 retrocopies | |
Microcebus murinus | ENSMICG00000004921 | 9 retrocopies | |
Macaca mulatta | ENSMMUG00000021821 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000000969 | 6 retrocopies | |
Mus musculus | ENSMUSG00000028081 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000007011 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000011893 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015088 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000004235 | 8 retrocopies |
retro_vpac_253, retro_vpac_31, retro_vpac_322, retro_vpac_439, retro_vpac_486 , retro_vpac_497, retro_vpac_529, retro_vpac_88,
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