RetrogeneDB ID: | retro_vpac_626 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_8385:48339..48782(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MTX3 | ||
Ensembl ID: | ENSVPAG00000009404 | ||
Aliases: | None | ||
Description: | metaxin 3 [Source:HGNC Symbol;Acc:24812] |
Percent Identity: | 57.52 % |
Parental protein coverage: | 93.04 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | MAAPLELSCWGGGWGLPS-VHSESLVVMAYAKFSGAPLKVNVIDNTWRGSRGDVPVLTSEDNIVSQPAKI |
MAAPL...CWGG...LPS..HS..LVV.AYAKFSGA.L..NV.DN..RGSRG..P.LT..DNIVSQ.... | |
Retrocopy | MAAPLVIRCWGGS*RLPS<AHSKYLVVIAYAKFSGALLNINVTDNI*RGSRGNAPILTTDDNIVSQLXXX |
Parental | LNFLRKQKYNADYELSAKQGADTLAYIALL-EEKLLPAML-HTFWVESDN-YFSVTKP--WFASRIPFPL |
.......K...D.ELSAK.GADTL...AL...EKL.P..L..TF..E..N..F..TKP..WFAS.IPF.L | |
Retrocopy | Y*TF*ENKFQDDDELSAKPGADTLIHTALQ<KEKLFPTVL<FTFSTENAN<FFTATKPLFWFAS*IPFLL |
Parental | SLILPGRMSKQIL |
SLI.PG.MSK..L | |
Retrocopy | SLIMPGSMSKEAL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010893 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000019700 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021104 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000009404 | 1 retrocopy |
retro_vpac_626 ,
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