RetrogeneDB ID: | retro_mmul_489 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 1:47116197..47116521(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MTX3 | ||
Ensembl ID: | ENSMMUG00000021104 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 67.59 % |
Parental protein coverage: | 73.61 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | KVNVIDNTWRGSRGDVPILTTEDNMVSQPAKILNFLRKQKYNADYELSAKQGADTLAYIALLEEKLLPAV |
KVNVID..WRGSR.D..ILTTED..VS..AKI.NF..KQKYN...E..AKQ.ADTLA...L.E.KL.P.. | |
Retrocopy | KVNVIDSHWRGSREDISILTTEDKIVSSLAKIFNF*GKQKYNVYCEFPAKQKADTLAFTVLFE*KLPPLA |
Parental | LHTFWVESDNYFTVTKP--WFASQIPFPLSLILPGRMS |
LH.FWVES.NYF.VTKP..WFAS.IPFPL.LIL.G.MS | |
Retrocopy | LHAFWVESNNYFAVTKPWCWFASLIPFPLGLILSGKMS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 1 .79 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 1 .51 RPM |
SRP007412_cerebellum | 0 .00 RPM | 2 .32 RPM |
SRP007412_heart | 0 .00 RPM | 0 .12 RPM |
SRP007412_kidney | 0 .00 RPM | 0 .82 RPM |
SRP007412_liver | 0 .00 RPM | 0 .16 RPM |
SRP007412_testis | 0 .00 RPM | 0 .83 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000010893 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000019700 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000010185 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000021104 | 1 retrocopy |
retro_mmul_489 ,
|
Vicugna pacos | ENSVPAG00000009404 | 1 retrocopy |