RetrogeneDB ID: | retro_vpac_645 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | scaffold_9270:42100..42462(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSVPAG00000002816 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CRABP2 | ||
Ensembl ID: | ENSVPAG00000005002 | ||
Aliases: | None | ||
Description: | cellular retinoic acid binding protein 2 [Source:HGNC Symbol;Acc:2339] |
Percent Identity: | 64.23 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MPNFSGNWKIIRSENFKGSFQQMGVNMMLRKIAVAAASKPAVEIKQEGDTFYIKTSTTVRTTEINFKIGE |
MPNF.G.WK...SENF.......GV..MLR..A.AAASKP.VE..Q.GD.FYIKTSTTVRTTEI.FK.GE | |
Retrocopy | MPNFTGTWKMRSSENFDELLKALGVSAMLRNVAKAAASKPHVETRQDGDQFYIKTSTTVRTTEIDFKVGE |
Parental | EFEEQTVDGRPCKSLVKWESENKMVCEQRLLKGEG-PKTSWTRELTNDGELIL |
.FEE.TVDGR.C.S...WE.E.K..C.Q.LL.G.G.P.TSWT.EL.ND.ELIL | |
Retrocopy | GFEEETVDGRKCRSSATWENESKVHCTQTLLEGDG<PLTSWTHELAND-ELIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macaca mulatta | ENSMMUG00000002295 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000015843 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000005002 | 1 retrocopy |
retro_vpac_645 ,
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