RetrogeneDB ID: | retro_vpac_68 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_147:12217..12517(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | THOC7 | ||
Ensembl ID: | ENSVPAG00000010083 | ||
Aliases: | None | ||
Description: | THO complex 7 homolog (Drosophila) [Source:HGNC Symbol;Acc:29874] |
Percent Identity: | 52.38 % |
Parental protein coverage: | 50.49 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | CKKQILQAKRI-RKNRQEYDALAKVIQHHPDRHE-TLKELEALGKELEHLSHIKESVEDKLELRRKQFHV |
C..QI..AK....KN.QE..A.A.V.QHHP.RHE...KEL.ALGK....L.H.K...EDKLELR.K.... | |
Retrocopy | CRMQIFLAKQV>GKNCQESNAFAEVVQHHPNRHE<ARKELQALGKDRTFLKHSKGKTEDKLELRLKTIPC |
Parental | LLSTIHELQQTLENDEKLSEVEEAQETSMETDPKP |
....IHELQ....ND.KL..VEE.QET...TD..P | |
Retrocopy | SS*IIHELQC---NDGKLLDVEETQETRKQTDSRP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000012170 | 2 retrocopies | |
Callithrix jacchus | ENSCJAG00000034899 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000007930 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000005917 | 5 retrocopies | |
Loxodonta africana | ENSLAFG00000001987 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000012060 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000021860 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000024865 | 1 retrocopy | |
Sorex araneus | ENSSARG00000013894 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000011491 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000007069 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000013618 | 3 retrocopies | |
Vicugna pacos | ENSVPAG00000010083 | 1 retrocopy |
retro_vpac_68 ,
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