Parental gene:

ENSCJAG00000034899

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:15:40002761..40029855(-)


>ENSCJAG00000034899
ATGGGAGCCGTGACTGACGACGAAGTCATACGGAAGCGTCTCCTCATTGATGGAGATGGTGCTGGAGATGATCGGAGAAT
TAATCTGCTAGTGAAGAGTTTCATTAAATGGTGCAACTCTGGGTCCCAGGAAGAAGGATATAGCCAGTACCAGCGTATGC
TGAGCACACTGTCTCAATGTGAATTTTCAATGGGCAAAACTTTACTAGTATATGATATGAATCTCAGAGAAATGGAAAAT
TATGAAAAAATTTACAAGGAAATAGAATGTAGCATTGCTGGAGCACATGAAAAAATTGCTGAGTGCAAAAAGCAAATTCT
TCAAGCAAAACGAATACGAAAAAATCGCCAAGAATATGATGCTTTGGCAAAAGTGATCCAGCATCATCCAGACAGGCATG
AGACATTAAAGGAACTAGAAGCTCTGGGAAAAGAATTAGAGCATCTTTCACATATTAAAGAAAGTGTCGAAGATAAGCTG
GAATTGAGACGGAAACAGTTTCATGTTCTTCTTAGTACCATCCATGAACTTCAGCAAACATTGGAAAATGATGAAAAACT
CTCAGAGGTAGAAGAAGCTCAGGACGCAAGCATGGAAACAGATCCTAAGCCATAG

Library Parental gene expression (RPM)
SRP051959_spleen 5 .76 RPM
SRP051959_skeletal_muscle 17 .60 RPM
SRP051959_lymph_node 6 .37 RPM
SRP051959_lung 6 .67 RPM
SRP051959_liver 9 .99 RPM
SRP051959_kidney 8 .52 RPM
SRP051959_heart 7 .72 RPM
SRP051959_colon 6 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Choloepus hoffmanni ENSCHOG00000012170 possible_ortholog 2 retrogenes
retro_chof_2655, retro_chof_722,
Cavia porcellus ENSCPOG00000007930 possible_ortholog 2 retrogenes
retro_cpor_1127, retro_cpor_1164,
Dasypus novemcinctus ENSDNOG00000005917 possible_ortholog 5 retrogenes
retro_dnov_2083, retro_dnov_2129, retro_dnov_2335, retro_dnov_2374, retro_dnov_380,
Equus caballus ENSECAG00000000497 ortholog_one2many 1 retrogene
retro_ecab_1097,
Echinops telfairi ENSETEG00000015076 possible_ortholog 3 retrogenes
retro_etel_1093, retro_etel_1858, retro_etel_85,
Loxodonta africana ENSLAFG00000001987 possible_ortholog 2 retrogenes
retro_lafr_585, retro_lafr_774,
Macropus eugenii ENSMEUG00000006342 possible_ortholog 4 retrogenes
retro_meug_1481, retro_meug_1524, retro_meug_1599, retro_meug_1861,
Myotis lucifugus ENSMLUG00000012060 ortholog_many2many 1 retrogene
retro_mluc_369,
Monodelphis domestica ENSMODG00000003009 possible_ortholog 1 retrogene
retro_mdom_315,
Oryctolagus cuniculus ENSOCUG00000021860 ortholog_many2many 1 retrogene
retro_ocun_124,
Otolemur garnettii ENSOGAG00000024865 possible_ortholog 1 retrogene
retro_ogar_2733,
Ochotona princeps ENSOPRG00000016403 ortholog_one2many 2 retrogenes
retro_opri_1031, retro_opri_345,
Sorex araneus ENSSARG00000013894 possible_ortholog 1 retrogene
retro_sara_41,
Sarcophilus harrisii ENSSHAG00000011615 possible_ortholog 1 retrogene
retro_shar_240,
Sus scrofa ENSSSCG00000011491 possible_ortholog 1 retrogene
retro_sscr_1182,
Ictidomys tridecemlineatus ENSSTOG00000012552 ortholog_one2many 1 retrogene
retro_itri_1425,
Tupaia belangeri ENSTBEG00000007069 possible_ortholog 1 retrogene
retro_tbel_49,
Tursiops truncatus ENSTTRG00000013618 possible_ortholog 3 retrogenes
retro_ttru_1365, retro_ttru_23, retro_ttru_957,
Vicugna pacos ENSVPAG00000010083 possible_ortholog 1 retrogene
retro_vpac_68,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_354 96.57 100.00
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2. retro_cjac_398 91.41 97.06
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Download FASTA sequences of all ENSCJAG00000034899 retrocopies