RetrogeneDB ID: | retro_vpac_69 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1480:189491..189733(+) | ||
Located in intron of: | ENSVPAG00000010767 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PCBD1 | ||
Ensembl ID: | ENSVPAG00000004496 | ||
Aliases: | None | ||
Description: | pterin-4 alpha-carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha [Source:HGNC Symbol;Acc:8646] |
Percent Identity: | 78.05 % |
Parental protein coverage: | 77.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | GWNELEGRDAIFKQFHFKDFNRAFGFMTRVALQAEKLD-HHPEWFNVYNKVHITLSTHECAGLSERDINL |
G.NELEG.DAIFKQFHFKDFNRAFGFMT...LQAEK.D..HPE.FNVY.K.HI.LSTHECAGLS.R.IN. | |
Retrocopy | G*NELEGQDAIFKQFHFKDFNRAFGFMTEMLLQAEKSD<PHPEGFNVYHKFHIILSTHECAGLSKRNINR |
Parental | ASFIEQVAVSMT |
ASF.EQVA.S.T | |
Retrocopy | ASFTEQVAGSVT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000011866 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000012703 | 1 retrocopy | |
Felis catus | ENSFCAG00000001235 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000001397 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000016074 | 3 retrocopies | |
Procavia capensis | ENSPCAG00000007201 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000010275 | 1 retrocopy | |
Takifugu rubripes | ENSTRUG00000017869 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000005775 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000004496 | 1 retrocopy |
retro_vpac_69 ,
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