RetrogeneDB ID: | retro_vvin_10 | ||
Retrocopylocation | Organism: | Grape (Vitis vinifera) | |
Coordinates: | 2:4424612..4425671(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | VIT_02s0025g04920 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | VIT_13s0019g03270 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.67 % |
Parental protein coverage: | 99.02 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | SSRFFTIGLVTAWYSSNIGVLLLNKYLLSNYGFKYPIFLTMCHMTACSLLSYVAIAWMKMVPMQTIRSRV |
S....T......WY.SNIGVLLLNKYLLS.YG..YPIFLTM.HM..C...SY.AI.W...VP.Q.I.SR. | |
Retrocopy | SPNVLTALIIASWYLSNIGVLLLNKYLLSFYGYRYPIFLTMLHMLSCAGYSYAAINWLELVPLQHILSRR |
Parental | QFMKISALSLVFCASVVSGNISLRFLPVSFNQAIGATTPFFTAVFAYLMTLKREAWLTYVTLIPVVTGVI |
QF.KI.ALS..FC.SVV.GN.SLR.LPVSFNQAIGATTPFFTA.FA.L.T.K.E....Y..L.PVV.G.. | |
Retrocopy | QFLKIFALSAIFCFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKETGEVYLALLPVVFGIV |
Parental | IASGGEPSFHLFGFLMCIGATAARALKSVLQGILLSSEGEKLNSMNLLLYMAPIAVVFLLPATLFMEENV |
.AS..EP.FHLFGFL.CIG.TA.RALKSV.QGILL.SE.EKL.SMNLLLYMAP.A...LLP.TL..E.NV | |
Retrocopy | LASNSEPLFHLFGFLICIGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMAALILLPFTLYIEGNV |
Parental | VGITLALARDDIKIVWYLLFNSALAYFVNLTNFLVTKHTSALTLQVLGNAKGAVAVVVSILIFRNPVSVT |
...T...AR.D..I...L..N...AY.VNLTNFLVTKHTSALTLQVLGNAK.AVA.VVS.LIFRNPV.V. | |
Retrocopy | AAFTVEKARGDSFIIFLLIGNATVAYLVNLTNFLVTKHTSALTLQVLGNAKAAVAAVVSVLIFRNPVTVM |
Parental | GMLGYSLTVFGVILYSEAKKRSK |
GM.G...T..GV.LYSEAKKRSK | |
Retrocopy | GMTGFAVTIMGVVLYSEAKKRSK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Amborella trichopoda | AMTR_s00080p00074790 | 1 retrocopy | |
Medicago truncatula | MTR_3g070000 | 1 retrocopy | |
Prunus persica | PRUPE_ppa009115mg | 1 retrocopy | |
Theobroma cacao | TCM_042615 | 1 retrocopy | |
Vitis vinifera | VIT_13s0019g03270 | 1 retrocopy |
retro_vvin_10 ,
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