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Detailed information on CNT0035385


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0018989, E-value = 4e-08 (Z. mays)
CNT0002612, E-value = 4e-08 (G. max)
CNT0037993, E-value = 7e-13 (S. moellendorffii)

Expression of CNT0035385

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)9.84616.0119.52624.9259.13819.00919.03424.10819.133.0872.0573.8966.097chloronema (SRR435295)chloronema (SRR435296)chloronema (SRR435297)chloronema (SRR435298)two-week-old protonema, whole organism (SRR787291)two-week-old protonema, whole organism (SRR787292)two-week-old protonema, whole organism (SRR787293)two-week-old protonema, whole organism (SRR787294)two-week-old protonema, whole organism (SRR787295)two-week-old protonema, whole organism (SRR790254)two-week-old protonema, whole organism (SRR790259)two-week-old protonema, whole organism (SRR790261)two-week-old protonema, whole organism (SRR790624)0246810121416182022242628

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MFQLVLLLVRSRRSPCTLRRKDKHSYLGGTGNL*

>peptide 2 (62 aa)
MVLWSLSFAMHAWLSSCAVPALGCKWESSSEPRTSLACTPTLGRVTTNLAVQLLKDCNSVSR*

Sequence

>CNT0035385
ATGAGGGCCAAGTGGAAGAAAAAACGTATGAGGCGTCTCAAACGTAAGAGGCGAAAGATGAGACAGAGGTCGAAGTAGCCGTTCCGATTTTGGTCGCTGT
CTTGGGAGCAGTGGAGTATGTCATATGTTTCAACTCGTTCTGCTGCTAGTGAGAAGTAGGCGCAGCCCTTGCACGTTACGAAGAAAAGACAAACATTCAT
ACTTGGGAGGCACAGGGAACTTGTAAAGGTGAATCACTGAAGCCTCTCAACACACGATTACTCAGGTGCTCCATTCAGATGCCCGATCGTGAATCAAGTG
TGGGTGACGGAATGTTTAAGGATTACTGAAAAGAAACTAATGCAAGGTTGTCTCTTCTGCCGTTGGTTCGTTATTGACCCTCTCTGAACACAACTCACCT
TGAAGAAATTGAATGGAATAGCTTTCATAGATTATCTAAAACAGCGGAGATACTATTGAGAAGAATGAGGAGGCCGCAAGATGAGAACTGTACTTTTGGT
TCACTTTGACGAGGTGAATCATCTCTATTAACTTTTGAGGGTGGACTCATTCAGTCGAGCCGCTTAAACTCCATGGTCCTCTGGTCGTTGAGTTTCGCTA
TGCACGCGTGGTTATCAAGTTGTGCTGTGCCAGCCTTGGGATGTAAGTGGGAGAGCTCATCAGAACCACGAACCTCACTAGCTTGCACGCCTACTTTGGG
GAGAGTTACTACGAATCTTGCAGTTCAACTTTTGAAAGACTGCAACTCTGTCTCACGCTGATAGACCTGGCTGCCATCAGATCATCTTCAAGGGATAAGA
GAAAGAGCATAGGCAACGGTCTCCCGAACTCTCGGATGCTTGCAAAACTTAAGTACCGATTTTAAATGTAATTTAAGCAATATTATTGGTGGATAATTTG
TACACTCCACAATTGCCTCCGAATAAAATTTGTACGAGCTTGTGATTGAGATTCTTGAT