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Detailed information on CNT0018989


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0005984, E-value = 2e-21 (V. vinifera)
CNT0042639, E-value = 9e-18 (A. thaliana)
CNT0035385, E-value = 3e-08 (P. patens)
CNT0002612, E-value = 3e-27 (G. max)
CNT0022204, E-value = 6e-25 (A. trichopoda)
CNT0027267, E-value = 7e-34 (O. sativa)
CNT0011195, E-value = 9e-18 (S. tuberosum)
CNT0037993, E-value = 6e-19 (S. moellendorffii)

Expression of CNT0018989

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)29.05229.47428.64212.48210.42213.16117.14974.10782.4966.614Whole seedling (above ground only) (SRR504661)Whole seedling (above ground only) (SRR514101)Whole seedling (above ground only) (SRR515384)non specified (ERR361362)non specified (ERR361363)non specified (ERR361364)non specified (ERR361365)primordium (SRR1594027)primordium (SRR1594028)primordium (SRR1594029)051015202530354045505560657075808590

Peptides detected in this lncRNA

>peptide 1 (60 aa)
EAHDNLRSGPRLLSLLGLIHWLSYIEARRELAPPPPPLSHHRPLFRFPPKPVREAVIPPR*

Sequence

>CNT0018989
TTGAGGCCCATGATAACTTAAGATCTGGCCCAAGACTGTTATCCCTGCTAGGGTTAATCCACTGGCTCTCCTATATAGAAGCGCGGCGAGAGCTCGCACC
GCCGCCGCCGCCGCTGTCGCATCACAGGCCTCTCTTCCGGTTTCCCCCCAAACCCGTCCGAGAGGCAGTCATCCCGCCGCGATGAGGGCCAAGTGGAAGA
AGAAGCGGATGAGGCGGCTTAAGAGGAAGCGCCGAAAGATGAGGCAGAGGTCCAAGTAGGCAGATTCATGGAGTGTCCCCGCCTGGAGTCTCTCTGCGTT
CGGTTGTTGTTTACTGAGTAATTTTAGTTTTTTTACTAAGACAGTCTGTTATGGATCAGAAATTCCTTGCGTTTGTCCGTGGTCTAGATATTGCATCAAG
TGTTCTGCACTTTATTCTTTAGTTGTTAGTTGATGCGAGTGCTTGTCAATGGTTGTGGACTTCGAAATTGCTATATGTAGGTAGGGCCTGAGCCTGACGT
GCATATATAGGGACACTCGTTACCAAAGTCGTTTAGAAAACCGTTTGTTGCTACCAAATCGTTAGCAGACAATGGTAAGCTGACCTGACATGCATATATG
TTCGTGGCTTGTGGTCGGAATTAGGCAACTATGAATCAGTTTTTGGCAGCTAAATGTTTCCCAACTTAGGCCGGAGTACTTTAAATTTTATTCCTTTCTA
GTTTCTTCTATAAAAAAGGTCCAGCTCCATGT