Detailed information on CNT0000518 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q9FF10|HPSE1_ARATH, E-value = 3e-24

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0022093, E-value = 5e-09 (A. trichopoda)
CNT0011077, E-value = 3e-07 (S. tuberosum)

Expression of CNT0000518

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)1.3350.6120.7041.2512.6372.7413.9332.2635.0447.325.25.1483.9862.6161.798leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.511.522.533.544.555.566.577.58

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MKRWDELNQFFYETGYLDQFGIASCYSTKVYCRQTLIGGNYGLLNTTTFAPNPDYYSF*

>peptide 2 (64 aa)
MLMTFTYTLYIVGKTYSDRQLAVIIRPLKVDRRNVRRTKSIIHLAMNFLFTVTVFVCRYRSFFL*

>peptide 3 (31 aa)
MWVDFSGLVSSFPCQGNPRYVYLHYFYIKLL*

>peptide 4 (37 aa)
MAFSIPPPLLPILTTTVSKQCSFVASVNGKEGSCGLK*

Sequence

>CNT0000518
ATAAATTTAATTTTAGTTTATCATGTACTAGTATAATTATACTTCTTTTATGGGCAAACAAATGTTAAATTTTTTTTAAGATACCTGGAACCTTGCTAAT
TTAGCTTCTTTTTTTTTTTTGTGCAATCAAAATTGGAGTGTCCAATACCTAGAACCTTGCTACTGTTCATATTGAAGGGAAACAATTTTATTCATCGGGT
ATGTCGTGTTCCATGTCTCCATGAAGTGACATTTTGGTTTGAATTTTACAATGTTGAGTCTTTAAATGATTGCTTGTGTGAGGCTAAAAGAATTCTGCAT
GACATTGTTTTGAATTAACTATGGCAAACTTAATTCATTGTTTTCTCTTGTTTGGTAATTACATCATATGCGCTAACAAGTAACATCTTGAATTTTCTTG
TTGTGCTGCTTGTGTAGACAGCTATTTTCGAATTTATGTTTCCCGTCCACTCCCAATCCACTATGTAGAACCTTGGCAAGCAATCAAGTAATTTTATTCA
TTGTTCACTTTAATGTGGGTTGATTTTTCAGGACTTGTCTCATCCTTTCCTTGCCAAGGCAATCCAAGGTATGTATATCTGCATTACTTCTATATAAAGT
TACTCTGATGACATTCTATTGTACATCACTTCCGAGTAACTGATTAAGAAAATCAGTTACTTTGATGACATTCTGTTGTTTGTGACTGCATAAAGTTATA
ATGTATTTTATGAATATCTTCTTTGGAATAATTATGTTTAGCATGATGTTATTTGTTTCATAATTGTTGCACGATAGCCCTCAGGCCATTGAGGATAAGA
CTTGGAGGTTCTTTGCAAGACCAGGTTCTGTATGATGTGGGAAGTTTGAAGTCTCCTTGCCATTCCCTTCAAAAGGTTAAAGGTGGATTGTTTGGATTTT
CAAAGGGATGTTTACACATGAAAAGGTGGGATGAGCTGAATCAGTTTTTCTACGAGACAGGGTACTTAGATCAATTTGGAATAGCATCCTGCTACAGCAC
TAAAGTCTATTGCAGGCAGACTTTAATTGGAGGGAACTATGGCCTTCTCAATACCACCACCTTTGCTCCCAATCCTGACTACTACAGTTTCTAAACAGTG
CAGTTTTGTGGCATCGGTTAATGGGAAAGAAGGTTCTTGCGGTCTCAAGTGATGTTCATATTAAAGACTTTTACCAATAATTAGGAAATGTAAGTAGAAG
TTAATGACTTTTACCTACAGTTGAAGATGATAGGTACATATTAAAGAATTTTACCTACAGGTAGGAAATGTTAATGACTTTTACCTACACATTATACATA
GTAGGTAAAACCTATAGTGATAGACAATTAGCCGTCATTATACGCCCCCTCAAAGTTGACAGAAGAAACGTTCGTAGGACAAAGTCTATCATACATTTGG
CTATGAATTTTTTATTTACAGTGACAGTTTTTGTCTGTAGGTATAGGTCATTTTTCTTGTAGTTTGGTCCTTCAAAGGAGTCCCAAATTAAATAACAATT
TGTATCATTCACACAAACAAGGTATACATATACTTATGATCTAATAGCTACATTCAAC