Detailed information on CNT0000591 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q5I0K7|ALG13_RAT, E-value = 6e-14

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0030549, E-value = 1e-13 (O. sativa)
CNT0012353, E-value = 1e-07 (S. tuberosum)

Expression of CNT0000591

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)7.6546.2998.20723.1761.8721.8812.5762.079.6127.5338.8639.86413.09328.53612.625leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)024681012141618202224262830

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MKSNDKKHSYGKPLFQTTMNWNLLVKTSAIII

>peptide 2 (36 aa)
MMHKRSMSFKKCIMYVIYIYSHCMHVQIVSLMFRCE*

>peptide 3 (52 aa)
LNGNLSNQLIRKTYASFAVDLSLSSMEFQEEHICPSLIHHDMLSYSCLISIS*

>peptide 4 (62 aa)
MDNHQSELAEELADRKHLYCASPQTLHQTIADMDLSSLLPYSPGDATPVAKHINRFLGFPDD*

Sequence

>CNT0000591
CTAAATGGAAACCTCTCTAACCAGTTGATCAGGAAGACATATGCATCCTTTGCAGTAGACTTATCTCTTTCCAGCATGGAATTCCAAGAAGAGCACATTT
GCCCCTCCTTAATACACCATGATATGTTAAGCTATTCATGTCTCATAAGTATTTCATAAAGGATCAGGTAGCATATTTGAGACCTTGCGGCTGGGCAAAC
CTTTAGTTGTGGTTGTAAATCAAGATTTGATGGATAATCATCAGAGTGAGCTGGCTGAAGAGCTTGCTGATAGAAAACATCTGTATTGTGCTAGTCCTCA
AACACTCCATCAAACTATAGCGGACATGGATTTAAGTTCTCTCCTTCCTTACTCCCCAGGTGATGCTACACCAGTGGCCAAGCATATAAACAGATTCCTT
GGTTTTCCTGATGATTGATCTAATCTCTCTCTCTCTGCCCGAAATATTTTAAGTTTTAATGATGCATAAAAGATCAATGTCTTTCAAGAAATGTATTATG
TATGTGATATACATATACTCACATTGCATGCATGTTCAAATTGTGAGCTTAATGTTCAGGTGTGAGTGAAAATCGACAATACATCAAGTCAGACATCATG
TTTAGCTTTGCTTTCCTGTCATTCATTACTTCCATTTTCACTTGATTGAACTTGCTTGGATGAAAAGCAATGATAAAAAGCACAGTTATGGCAAACCATT
ATTTCAGACAACTATGAATTGGAATTTGTTAGTAAAAACTAGCGCTATTATTATCTT