Detailed information on CNT0002100 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0028376, E-value = 3e-47 (O. sativa)
CNT0008455, E-value = 3e-07 (S. tuberosum)

Expression of CNT0002100

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)0.3280.52604.3030000000.279000.90.364leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)00.250.50.7511.251.51.7522.252.52.7533.253.53.7544.254.54.75

Peptides detected in this lncRNA

>peptide 1 (37 aa)
VMMNKAVTRNLTTLLADHDIFLLSCFLSYNLNRGRVF*

Sequence

>CNT0002100
GTTATGATGAATAAGGCAGTCACAAGGAACCTCACTACTCTTCTTGCTGACCATGACATCTTCCTCCTAAGTTGTTTTCTGTCCTACAATTTGAACCGAG
GACGGGTTTTTTAAGTTAGTTCATCCTTGAGGGATCGTGATCCTTTGTCCCGTCCACTGTAACACGTGTGTCGCCCAGGACATAAGGGGTATGATGACTT
GACGTTATCCTCACCTTCCTCCGACTTATCACCGGTAGTCTGTTTAGGATTCCAAACTAAATGTTGGCAACTAAACATGAGGATTGCGTTCGTTGCGGGA
CTTAACCCAACACCTTACGGCACAAGGAGCAATATAGAAATAACTAAGAAAGAGTTCATGTAATCATATTAATATTTAATTTTGTAATTCAATTTTAAAA
CTGTGTGATTTTTAAGGAGCAACATCAGAACAATTGAGTAAGAGACCGTAGAA

lncRNA-RNA interactions

Number of interactions: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA04G33460.1 Uncharacterized protein protein coding CNT0002100 146 69 CDS Trans