Detailed information on CNT0002539 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|P35135|UBC4_SOLLC, E-value = 6e-42

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0021795, E-value = 2e-40 (A. trichopoda)
CNT0009352, E-value = 3e-26 (S. tuberosum)

Expression of CNT0002539

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)3.6184.6453.95513.7131.152.0221.8091.4847.7968.1233.9057.4087.568.60113.107leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)0123456789101112131415

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYAGGVFLVSIHFPPDYPFKPPKVLYPILLLTLAACIIRY*

>peptide 2 (89 aa)
RYHPIPILCELSRISFFLSSLRFPLCLLLQPLFFLSLSFALSFSLKNLNPFWSSSLPLTQFRYGFETHPEGAQGFAEGSSYVMQRRSCG*

>peptide 3 (47 aa)
AIIQSQFSVNFLESRSSFLLSDSPFASFFNPFSFSLCLSHFHSLLKI*

Sequence

>CNT0002539
ACGCTATCATCCAATCCCAATTCTCTGTGAACTTTCTAGAATCTCGTTCTTCCTTTCTTCTCTCAGATTCCCCCTTTGCCTCCTTCTTCAACCCCTTTTC
TTTCTCTCTCTGTCTTTCGCACTTTCATTCTCTCTTAAAAATCTAAATCCCTTTTGGTCTTCATCTTTGCCTCTGACCCAGTTTAGGTATGGCTTCGAAA
CGCATCCTGAAGGAGCTCAAGGATTTGCAGAAGGATCCTCCTACGTCATGCAGCGCAGGTCCTGTGGCTGAAGACATGTTTCACTGGCAAGCCACAATCA
TGGGACCTGCTGATAGCCCATATGCAGGTGGTGTTTTCTTAGTTTCAATTCATTTTCCTCCTGACTATCCCTTCAAGCCACCAAAGGTACTCTATCCCAT
TCTTTTACTCACATTAGCTGCTTGTATTATTAGGTATTGATCTTCTAAACATTTTCTTAAAGTTGTATCTTCAGAGGTCAAATTTTTTTAAGTGCTTTTT
GTTTCAAAGATTCACTTGTCTGTGAACTTGATGTTCACCATCCTTCCATGGTAGTGGAAGTTTGATTGAGCTACATTCTTGACAATCTTTGCACATACAG
TCTCAACTGTTAACTG