Detailed information on CNT0002933 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot:
sp|Q94F47|UBC28_ARATH, E-value = 2e-60

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0021795, E-value = 3e-24 (A. trichopoda)
CNT0011416, E-value = 2e-37 (S. tuberosum)

Expression of CNT0002933

Created with Highcharts 4.1.6Chart context menuExpression (RPKM)5.5466.7434.4110.2918.1745.6364.8847.2398.2318.2948.1637.9777.5657.8388.761leaves (SRR924099)leaves (SRR924144)leaves (SRR926169)seed (SRR639168)shoot apical meristem (SRR824155)shoot apical meristem (SRR824156)shoot apical meristem (SRR824157)shoot apical meristem (SRR824158)shoot apical meristem (SRR824159)shoot apical meristem (SRR824160)shoot apical meristem (SRR824161)shoot apical meristem (SRR824162)shoot apical meristem (SRR824163)whole seed (SRR639162)whole seed (SRR639164)01234567891011

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MTRLCLKLPTCTRLTRLSMKPLLVAGHRMEINHGKGIDDYL*

>peptide 2 (29 aa)
IKKIFSIIHVCIFFSFIFYSLHLTFKCRR*

>peptide 3 (49 aa)
MASKRIVKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYTGCI*

Sequence

>CNT0002933
ATTAAAAAAATATTTTCAATTATTCATGTATGTATATTTTTTTCTTTCATTTTTTATTCTTTGCACCTAACTTTCAAATGTAGACGTTGATCCTACGCTA
AACGGAACCTTCTAGAACCCAAAGTTTTTCTCTCAGTTCTTCGTCAATCAAGTCAACCCCCCTTTCAATTTCAACCCTATCTCTGCTCTCTTTTTCTTCA
TCATTTGTTTTTGGGTCTCTCTGTTTCCAAGTTTTTGAGTTATGGCATCGAAACGCATCGTGAAGGAGCTCAAGGATTTGCAGAAGGACCCTCCTACATC
CTGCAGCGCAGGTCCCGTGGCGGAGGATATGTTTCACTGGCAGGCAACAATCATGGGACCTCCTGATAGCCCATATACAGGTTGCATTTAGGACTAAGGT
ATTCCACCCAAACATCAATAGTAATGGAAGTATATGCCTTGACATTCTAAAAGAACAATGGAGCCCAGCACTAACCATTTCTAAGGTCCTTTTGTCCATT
TGCTCATTGTTGACGGATCCCAACCCTGATGACCCGCTTGTGCCTGAAATTGCCCACATGTACAAGGCTGACAAGGCTAAGTATGAAGCCACTGCTCGTA
GCTGGACACAGAATGGAAATCAACCATGGTAAGGGAATTGATGATTACTTGTGAATATTTCTTTGCAAGACATCGGTCATGGAAGAAATTGTTGTAAAAT
GTCACAAATTTTCTGCTTGTTGACTTGCTATTCCAAATGATGGTAATGAAATTATAGTTAGGAACAGGTAGTAGCTGCCTATTGTCGTGGAACTTGATCT
TTTTTTGGCTTGGGACAAAAAAAATCTCTAGTGGGATTATAAAATCATTAAATAGCCATAATAATAGTAGACTTTTTTGTGTGT