Detailed information on CNT0002979 (Glycine max)


BLAST search results

BLAST vs PNRD: nothing found

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE (A. thaliana): nothing found

Potential orthologs: nothing found

Most similar lncRNAs:
CNT0006508, E-value = 1e-06 (V. vinifera)
CNT0043994, E-value = 8e-08 (A. thaliana)
CNT0030602, E-value = 1e-06 (O. sativa)

Expression of CNT0002979

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MGECHLHIIIIIIIIIKVLNSLVTRHLSN*

>peptide 2 (30 aa)
MRIVIRKKIRGKRSHVRSLIYVKKKKTNIW*

>peptide 3 (37 aa)
MGEETVADLDSEIWLWGSAISTSSSSSSSSSKFLIAS*

>peptide 4 (31 aa)
MTREGKQQRTVKKQTTNTKRYYFLQSKATLL*

Sequence

>CNT0002979
TGACAGTTTAACAAGTTTTAACACAATTATTCCATCATAACACATTATTATAATATATTTGTATATGATAAATTTGTTGACTTAATTTGTGACTGCCAAA
GTAAAACTGCTTAACACATTATATATCACATTATTTTGTTAGATAAATTTATCGAAAAGGTAAGTAGCCGTAATGCTGTTTAAATGGACGGCTCTCCAGA
AGAATAAAGAGAAGAGATATCACCCAAAGTCTCTTAAAACGGTGAGTGATTAAAAAACAATTTTATAATTACAAATGCAACAAAAATATGTGAGAATAAC
TACATAAAAAAGGATAAATATATTTATTTAAAATAAGTTTTGTGGTAGATTTTTTTTGTTAAATGAGAATAAAAAGTAGTGGAAGATAATAATAGTTTGT
GTTAAAAGTAAAAAAGGGAGAATATTGAGGAATATGATCAGAACAGGCAAGTAGGCGCAGTGCTATTTATATTGAATGACAAGAGAAGGGAAACAACAAC
GGACGGTAAAAAAGCAAACAACCAACACCAAACGCTATTATTTCCTTCAAAGTAAAGCAACATTACTTTAACACGTGCACACTCTTTGCATTTCGTATTC
TCTCAGGAGTCAAATTGAATTTGGGATCACAAATGAAAGCCATAGAAATCTCCAGGAATCTCTCTCCCTTTACCTCCCACACCCTAATCAATCAATCTCC
AACAAGTAATAACCATTAAACACTTAAAAACAAGCACCACCGTTGAGTCACAACTCATTAGAGAGAGGTGCGCAATTGCGGTGCCTAACCTCGCTCGTTA
CTTCAATTATTTTTTTGGACTACCCACCAAGTCCAAATCCAAGTAAGGAATGAGGAAAAGACTCAAACGACGTCGTTTGGCTCTTCCCAAAGTTGTAAGG
AAGGAAGCATCTTAGCATTTGACACTATTATCCAACAAGGTGTAACGCATGCTAAACTTGTTAGGAAAAACCTGGGTTCGTTACTTGTTTTTCACACAAT
ATATTCCTAAAACTTGAAACTAAGTTCTTGCTAAATATTAATCTAAAAAAAATACCGAAATAACTCAAGGTCCCACGGAAAAAACAAAAAGGCATAACCA
AAAAAATCTTACTAAACATAACAGCTAAAAAAAATACGCTTCCCCTTTATTAGATAGGAAAATGATTCGATATATAAGTTATGCGGATTGTTATAAGGAA
AAAGATAAGAGGAAAAAGGTCCCATGTTAGATCTCTTATATATGTTAAAAAAAAAAAAACTAACATTTGGTGATAAAAAAAATAATAAAATGATTTATTT
TCCTATTTAAAAAAAGGAATAAAAACACCGAAGGGAAAGAGGAGGAGAGAGATTACCGCGACGGTGAGACCACGAAAAACATCAAGAGAAACCAGACGCG
GAGATTTGGGTTGAGGTTGGTGCCTGGAGATAATGCGTTGTTCCTCAATAATGTTGTGAATGTGAAGCGGGGTAGTTTGGCCAATGGGGGAAGAAACAGT
GGCAGATCTTGATTCAGAGATCTGGCTATGGGGGAGTGCCATCTCCACATCATCATCATCATCATCATCATCATCAAAGTTCTTAATAGCCTCGTAACTC
GCCATCTCTCAAATTAACAATGTCTTCTTGCTACCATCTATTTATACATAGATAATATTCTCATAACTTGAAGAAAAGAAACAATGCACTAATTGAAGGA
GTCCAGTTCTTTTTTTTTTTCTTTTCTCCTTGGCTCTTACTGTTTCTTGA

lncRNA-RNA interactions

Number of interactions: 2

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
GLYMA08G47880.1 Uncharacterized protein protein coding CNT0002979 526 330 CDS_UTR Trans
GLYMA18G53630.1 Uncharacterized protein protein coding CNT0002979 1531 567 CDS_UTR Cis