SEARCH OPTIONS

lncRNA id
CPC status
Max. peptide length
Max. expression
Potential function
Results confidence
Order results by

Current search details:

Found 2569 records in
Amborella trichopoda

CPC status:   #
Max. peptide length:   #
Max. expression:   #
Potential function:   #
Results confidence:   Show all
Order by:   lncRNA ID

Record details CANTATAdb ID Species Location CPC status (score) Swiss-Prot best hit Max. peptide length Max. expression Potential function Confidence
CNT0021822 A. trichopoda AmTr_v1.0_scaffold00154:13574-16188 (-) noncoding (-1.31933)- 46 2.437 Confident lncRNA
CNT0021821 A. trichopoda AmTr_v1.0_scaffold00154:639081-641320 (-) noncoding (-1.03569)- 56 67.105 Confident lncRNA
CNT0021820 A. trichopoda AmTr_v1.0_scaffold00154:858162-871747 (-) noncoding (-0.642883)- 98 135.037 Confident lncRNA
CNT0021819 A. trichopoda AmTr_v1.0_scaffold00154:797212-817398 (+) coding (1.35045)1e-49 (sp|Q8JFW1|ASND1_DANRE) 594 3.665 Confident lncRNA
CNT0021818 A. trichopoda AmTr_v1.0_scaffold00154:1041196-1041441 (+) noncoding (-1.31292)- - 6.794 Confident lncRNA
CNT0021817 A. trichopoda AmTr_v1.0_scaffold00157:560012-572246 (+) coding (0.08436)8e-18 (sp|P54493|GLUP_BACSU) 346 9.624 Confident lncRNA
CNT0021816 A. trichopoda AmTr_v1.0_scaffold00157:713803-721674 (-) noncoding (-0.957996)0.00000002 (sp|Q8W4S5|Y5371_ARATH) 74 4.927 Confident lncRNA
CNT0021815 A. trichopoda AmTr_v1.0_scaffold00157:878314-880476 (+) noncoding (-1.2126)- 59 15.946 splicing regulationConfident lncRNA
CNT0021814 A. trichopoda AmTr_v1.0_scaffold00157:878314-880476 (+) noncoding (-1.24821)- 59 10.626 splicing regulationConfident lncRNA
CNT0021813 A. trichopoda AmTr_v1.0_scaffold00157:876430-877217 (+) noncoding (-0.670549)0.0000000000001 (sp|Q9FYE4|CML50_ARATH) 79 1.958 Confident lncRNA
CNT0021812 A. trichopoda AmTr_v1.0_scaffold00152:487735-728522 (+) noncoding (-1.31632)- 89 4.834 Confident lncRNA
CNT0021811 A. trichopoda AmTr_v1.0_scaffold00153:135888-158749 (-) noncoding (-0.982934)0.00000000001 (sp|P10978|POLX_TOBAC) 108 2.347 Confident lncRNA
CNT0021810 A. trichopoda AmTr_v1.0_scaffold00153:886251-892540 (-) noncoding (-0.229712)- 225 4.57 Confident lncRNA
CNT0021809 A. trichopoda AmTr_v1.0_scaffold00153:375288-387099 (+) coding (0.39702)3e-117 (sp|P0C895|Y2010_ARATH) 376 40.756 Low-confidence lncRNA
CNT0021808 A. trichopoda AmTr_v1.0_scaffold00155:8319-18075 (-) noncoding (-0.183917)4e-71 (sp|Q8GXX0|ERV1_ARATH) 196 3.986 Low-confidence lncRNA
CNT0021807 A. trichopoda AmTr_v1.0_scaffold00155:21371-55098 (-) noncoding (-0.0720093)0 (sp|Q500W7|PIGM_ARATH) 444 6.207 Low-confidence lncRNA
CNT0021806 A. trichopoda AmTr_v1.0_scaffold00155:21371-51777 (-) noncoding (-0.409365)2e-159 (sp|Q500W7|PIGM_ARATH) 307 5.839 Low-confidence lncRNA
CNT0021805 A. trichopoda AmTr_v1.0_scaffold00155:812300-842509 (+) coding (0.691648)- 595 14.605 Confident lncRNA
CNT0021804 A. trichopoda AmTr_v1.0_scaffold00155:352809-354625 (-) noncoding (-1.20819)- 58 5.618 Confident lncRNA
CNT0021803 A. trichopoda AmTr_v1.0_scaffold00155:572696-588630 (-) noncoding (-1.18541)- 86 7.785 Confident lncRNA
CNT0021802 A. trichopoda AmTr_v1.0_scaffold00155:759703-773880 (-) noncoding (-0.738652)3e-28 (sp|Q84JP1|NFYA7_ARATH) 168 25.593 Low-confidence lncRNA
CNT0021801 A. trichopoda AmTr_v1.0_scaffold00155:717405-723031 (-) noncoding (-0.654207)0.00000000002 (sp|Q6DBR9|KXDL1_DANRE) 120 8.541 Confident lncRNA
CNT0021800 A. trichopoda AmTr_v1.0_scaffold00155:682335-687779 (-) coding (1.29266)2e-49 (sp|P74003|PRMC_SYNY3) 451 11.606 Low-confidence lncRNA
CNT0021799 A. trichopoda AmTr_v1.0_scaffold00155:581130-588630 (-) noncoding (-1.2715)- 68 9.454 Confident lncRNA
CNT0021798 A. trichopoda AmTr_v1.0_scaffold00156:1078617-1080062 (-) noncoding (-1.03011)- 49 4.925 Confident lncRNA
CNT0021797 A. trichopoda AmTr_v1.0_scaffold00156:944960-973602 (+) noncoding (-0.7924)- 113 54.639 Confident lncRNA
CNT0021796 A. trichopoda AmTr_v1.0_scaffold00156:704580-705578 (+) noncoding (-1.02323)- 61 10.25 Confident lncRNA
CNT0021795 A. trichopoda AmTr_v1.0_scaffold00158:414327-455614 (-) noncoding (-0.48101)6e-104 (sp|P35135|UBC4_SOLLC) 193 263.015 Low-confidence lncRNA
CNT0021794 A. trichopoda AmTr_v1.0_scaffold00159:163604-199179 (+) noncoding (-0.104854)4e-23 (sp|Q91W78|USB1_MOUSE) 295 35.2 Low-confidence lncRNA
CNT0021793 A. trichopoda AmTr_v1.0_scaffold00159:622986-623723 (-) noncoding (-1.29796)- 50 29.904 Confident lncRNA
CNT0021792 A. trichopoda AmTr_v1.0_scaffold00162:550347-551406 (-) noncoding (-1.11276)- 58 5.431 splicing regulationConfident lncRNA
CNT0021791 A. trichopoda AmTr_v1.0_scaffold00162:286547-312686 (+) coding (0.640084)2e-45 (sp|P73555|Y875_SYNY3) 319 68.042 Low-confidence lncRNA
CNT0021790 A. trichopoda AmTr_v1.0_scaffold00162:286547-312686 (+) coding (0.609719)2e-49 (sp|P73555|Y875_SYNY3) 333 70.505 Low-confidence lncRNA
CNT0021789 A. trichopoda AmTr_v1.0_scaffold00160:918458-919333 (-) noncoding (-0.384797)- 93 7.76 Confident lncRNA
CNT0021788 A. trichopoda AmTr_v1.0_scaffold00160:918458-919333 (-) noncoding (-0.387934)- 93 6.613 Confident lncRNA
CNT0021787 A. trichopoda AmTr_v1.0_scaffold00161:250093-261164 (-) noncoding (-1.01517)0.00000000000006 (sp|Q94AH6|CUL1_ARATH) 39 8.527 Confident lncRNA
CNT0021786 A. trichopoda AmTr_v1.0_scaffold00164:456644-470743 (+) noncoding (-0.654298)2e-50 (sp|Q8LGE7|NDA8B_ARATH) 107 6.886 Low-confidence lncRNA
CNT0021785 A. trichopoda AmTr_v1.0_scaffold00165:46287-51416 (-) coding (1.90717)0.0000008 (sp|Q7A362|SRAP_STAAN) 815 12.059 Confident lncRNA
CNT0021784 A. trichopoda AmTr_v1.0_scaffold00165:878561-882633 (+) coding (0.133298)0 (sp|P48489|PP1_ORYSJ) 314 57.628 Low-confidence lncRNA
CNT0021783 A. trichopoda AmTr_v1.0_scaffold00163:742051-755420 (+) coding (2.68935)4e-52 (sp|B4FUS3|CNR8_MAIZE) 245 71.004 Low-confidence lncRNA
CNT0021782 A. trichopoda AmTr_v1.0_scaffold00163:272670-274310 (+) noncoding (-0.313713)- 167 2.48 Confident lncRNA
CNT0021781 A. trichopoda AmTr_v1.0_scaffold00163:742051-750215 (+) coding (1.39591)3e-26 (sp|B4FUS3|CNR8_MAIZE) 181 47.937 Low-confidence lncRNA
CNT0021780 A. trichopoda AmTr_v1.0_scaffold00166:720650-722990 (+) noncoding (-1.0458)- 101 4.56 Confident lncRNA
CNT0021779 A. trichopoda AmTr_v1.0_scaffold00166:710547-713064 (+) noncoding (-0.516588)- 164 19.085 Confident lncRNA
CNT0021778 A. trichopoda AmTr_v1.0_scaffold00166:701696-708058 (+) noncoding (-0.787763)- 116 23.838 Confident lncRNA
CNT0021777 A. trichopoda AmTr_v1.0_scaffold00166:720650-725937 (+) coding (0.0165686)2e-19 (sp|P10978|POLX_TOBAC) 53 8.609 Confident lncRNA
CNT0021776 A. trichopoda AmTr_v1.0_scaffold00166:468698-472159 (+) noncoding (-0.621655)- 231 16.606 Confident lncRNA
CNT0021775 A. trichopoda AmTr_v1.0_scaffold00166:701696-702935 (+) noncoding (-0.749105)- 93 9.948 Confident lncRNA
CNT0021774 A. trichopoda AmTr_v1.0_scaffold00169:645860-650660 (+) coding (0.410478)- 405 17.507 Confident lncRNA
CNT0021773 A. trichopoda AmTr_v1.0_scaffold00169:577315-581407 (+) coding (1.09504)3e-18 (sp|Q08277|HSP82_MAIZE) 101 15.545 Confident lncRNA