« Back to search



TCONS_00005420 (lncRNA) and ENST00000361758: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00005420 vs ENST00000361758)

Number of records: 1

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000361758 QKI, KH domain containing, RNA binding nonsense mediated decay TCONS_00005420 1536 742 UTR3 Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00005420 (lncRNA)Expression for ENST00000361758



Is lncRNA (TCONS_00005420) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000122435 up 0.00248557359175 1.30526 . YES


Is the interacting transcript (ENST00000361758) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000112531 down 0.00000000000000397827354348 2.49888 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00005420 (lncRNA)All interactions for ENST00000361758