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TCONS_00018265 (lncRNA) and ENST00000581897: detailed information for the interacting components



Function(s) assigned to this lncRNA-RNA interaction (TCONS_00018265 vs ENST00000581897)

Number of records: 10

Potential function Interacting transcript Gene description Transcript biotype lncRNA id Alignment score (LAST) Alignment length Transcript region involved in interaction Genomic orientation of interacting RNAs
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 836 432 CDS Trans
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 1250 612 CDS Trans
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 737 533 CDS Trans
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 805 302 CDS Trans
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 1878 673 CDS Trans
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 695 401 CDS Trans
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 1510 552 CDS Trans
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 1229 457 CDS Trans
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 1039 603 CDS Trans
ENST00000581897 neuroblastoma breakpoint family, member 15 protein coding TCONS_00018265 780 682 CDS_UTR Trans

Expression


NOTE: Expression values are provided at the transcript level. Differential expressio analysis was performed at the gene level.


Expression for TCONS_00018265 (lncRNA)Expression for ENST00000581897



Is lncRNA (TCONS_00018265) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000268043 - >0.05 - - -


Is the interacting transcript (ENST00000581897) differentially expressed?
Gene id Direction Adjusted p-value Fold change EBSeq confirmed? edgeR confirmed?
ENSG00000266338 down 0.000000243103643587 1.7348 YES YES

NOTE: the differential expression results were calculated for KTCN vs non-KTCN samples.
The KTCN samples: KC_15, KC_16, KC_17, KC_18, KC_19, KC_20, KC_21, KC_22, KC_23, KC_25, KC_26, KC_28, KC_30, KC_31, KC_32, KC_34, KC_55
The non-KTCN samples: KR_08, KR_13, KR_14, KR_15, KR_18, KR_19, KR_21, KR_23, KR_24, KR_25, KR_26, KR_27, KR_28, KR_33, KR_35, KR_48, KR_52


Other interactions


All interactions for TCONS_00018265 (lncRNA)All interactions for ENST00000581897