Parental gene:

HSP90AA1, ENSBTAG00000006270

Aliases:HSP90AA1, HSPCA
Description:Heat shock protein HSP 90-alpha [Source:UniProtKB/Swiss-Prot;Acc:Q76LV2]
Organism:Cow (Bos taurus)
Coordinates:21:68595872..68601204(-)


>ENSBTAG00000006270
ATGCCCGAGGAGACCCAGGCCCAGGACCAGCCGATGGAGGAGGAGGAGGTGGAGACTTTCGCCTTCCAGGCGGAAATTGC
CCAGTTGATGTCACTGATCATCAACACTTTCTACTCGAATAAGGAGATTTTTCTGAGGGAGCTGATTTCAAACTCGTCCG
ACGCCCTGGACAAGATCAGGTATGAGAGCTTGACCGATCCCAGTAAGTTAGATTCTGGGAAAGAGCTGCACATTAATCTC
ATACCGAACAAGCAAGATCGAACCCTCACCATCGTGGACACCGGCATTGGGATGACCAAGGCCGATTTGATTAATAACCT
GGGCACCATCGCCAAGTCCGGGACCAAAGCGTTCATGGAGGCTTTGCAGGCTGGCGCTGATATCTCCATGATTGGCCAGT
TTGGTGTCGGGTTTTATTCAGCCTATTTGGTGGCTGAGAAAGTGACCGTCATCACCAAACATAACGATGATGAGCAGTAT
GCCTGGGAGTCTTCTGCAGGAGGGTCCTTCACAGTAAGGACTGACACAGGAGAACCAATGGGACGTGGAACAAAGGTTAT
TCTGCATCTGAAAGAAGACCAGACTGAGTACCTGGAGGAGCGGAGAATAAAGGAGATTGTGAAGAAGCATTCTCAGTTCA
TTGGCTATCCCATCACTCTTTTTGTGGAAAAGGAACGTGATAAAGAAGTTAGTGATGATGAAGCAGAAGAGAAGGAAGAC
AAAGAGGAAGAGAAGGAGAAAGAAGAAAAGGAGTCTGATGACAAGCCCGAGATAGAAGATGTTGGCTCAGATGAAGAGGA
GGAAGAGAAGAAGGACGGGGACAAGAAGAAGAAAAAGAAGATCAAGGAGAAGTACATCGATCAAGAAGAGCTGAACAAGA
CAAAGCCTATCTGGACCAGAAACCCTGATGACATCACTAACGAGGAGTATGGAGAGTTCTACAAGAGCCTGACCAACGAT
TGGGAGGATCACTTGGCTGTCAAGCATTTTTCAGTTGAAGGACAGTTGGAATTCAGAGCCCTTCTTTTTGTCCCAAGACG
AGCTCCTTTTGACCTGTTTGAAAACAGAAAGAAGAAGAACAACATTAAGTTGTATGTTCGCAGAGTATTCATCATGGATA
ACTGCGAGGAGCTAATCCCTGAATACCTGAATTTCATTAGAGGTGTGGTGGATTCTGAGGATCTTCCTCTGAACATTTCC
CGTGAGATGTTGCAACAAAGCAAAATTTTGAAAGTTATCAGGAAGAATTTGGTCAAAAAGTGCTTGGAACTCTTCACTGA
ACTGGCAGAAGATAAGGAGAACTACAAGAAGTTTTATGAGCAGTTCTCTAAAAATATTAAGCTTGGAATACATGAAGATT
CTCAAAATCGGAAGAAGCTTTCAGAGCTGTTGAGGTACTATACTTCTGCTTCTGGTGATGAGATGGTTTCTCTCAAGGAC
TATTGCACAAGAATGAAGGAAAACCAGAAACACATCTATTACATCACAGGTGAGACCAAGGACCAGGTGGCCAACTCGGC
CTTCGTGGAGCGCCTCCGGAAGCACGGCTTGGAAGTGATCTACATGATCGAGCCCATTGATGAGTACTGTGTGCAGCAGC
TGAAGGAGTTTGAGGGGAAGACCTTAGTGTCAGTCACCAAAGAGGGCCTGGAACTTCCAGAAGATGAGGAAGAGAAAAAG
AAACAAGAAGAGAAAAAGACAAAGTTTGAAAACCTCTGCAAAATCATGAAGGACATTTTGGAGAAGAAAGTTGAAAAGGT
GGTTGTGTCAAACCGGTTGGTGACATCCCCATGCTGCATTGTCACAAGCACATACGGCTGGACAGCAAACATGGAACGGA
TCATGAAGGCGCAAGCCCTGAGAGACAACTCCACGATGGGTTACATGGCTGCCAAGAAGCACCTGGAGATCAACCCTGAC
CATTCCATCATTGAGACCTTGAGGCAAAAGGCAGAGGCTGACAAGAATGACAAGTCTGTGAAGGATCTGGTCATCCTGCT
GTACGAAACAGCTCTCCTGTCTTCTGGCTTCAGTCTGGAGGATCCCCAGACACATGCCAACAGGATCTACAGGATGATCA
AACTTGGTCTCGGTATTGACGAGGATGACCCCACTGCTGATGACAGCAGCGCCGCGGTCACTGAGGAAATGCCACCCCTG
GAAGGAGACGACGACACGTCCCGCATGGAGGAAGTGGACTGA

Library Parental gene expression (RPM)
ERP005899_liver 609 .21 RPM
ERP005899_muscle 922 .49 RPM
SRP017611_brain 1576 .39 RPM
SRP017611_kidney 749 .25 RPM
SRP017611_liver 368 .10 RPM
SRP030211_testis 1568 .13 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000033945 possible_ortholog 8 retrogenes
retro_cjac_1818, retro_cjac_2300, retro_cjac_2835, retro_cjac_3514, retro_cjac_3596, retro_cjac_3601, retro_cjac_3626, retro_cjac_502,
Cavia porcellus ENSCPOG00000002015 ortholog_one2one 1 retrogene
retro_cpor_1372,
Homo sapiens ENSG00000080824 ortholog_one2one 2 retrogenes
retro_hsap_237, retro_hsap_859,
Monodelphis domestica ENSMODG00000013302 ortholog_one2many 3 retrogenes
retro_mdom_1653, retro_mdom_2010, retro_mdom_817,
Mus musculus ENSMUSG00000021270 ortholog_one2one 1 retrogene
retro_mmus_2139,
Nomascus leucogenys ENSNLEG00000015925 ortholog_one2one 3 retrogenes
retro_nleu_714, retro_nleu_822, retro_nleu_854,
Pongo abelii ENSPPYG00000006153 possible_ortholog 1 retrogene
retro_pabe_1760,
Pan troglodytes ENSPTRG00000006736 ortholog_one2one 2 retrogenes
retro_ptro_207, retro_ptro_596,
Rattus norvegicus ENSRNOG00000007219 ortholog_one2one 1 retrogene
retro_rnor_860,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_501 90.72 100.00
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Download FASTA sequences of all ENSBTAG00000006270 retrocopies