RetrogeneDB ID: | retro_cjac_3596 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | ACFV01187211.1:5458..6615(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000033945 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 74.74 % |
Parental protein coverage: | 63.7 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | EKERDKEVSDDEESED-KPEIEDVGSVKEKYIDQEELNKTKPIWTRNPDDITNEEYGEFYKSLTNDWEDH |
EK.....V..DEE....K.........KE.YIDQEELNKTKP.WTRNPDDI..EEY.EFYKSLTNDWED. | |
Retrocopy | EKPKTEDVGSDEEDDSGKDKKTKTKKIKEEYIDQEELNKTKPLWTRNPDDIIQEEYEEFYKSLTNDWEDN |
Parental | LAVKHFSVEGQLEFRALLFVPRRAPFDLFENRKKKNNIKLYVRRVFIMDNCEELIPEYYIYFIRGVVDSE |
LAVKHFSVEGQLEFRALLF.P..APFDLFEN.KKKNN.KLYV..VFIMD.C.ELIPEY...FIR.VVDSE | |
Retrocopy | LAVKHFSVEGQLEFRALLFIPHEAPFDLFENKKKKNNVKLYVHHVFIMDSCDELIPEY-LNFIRVVVDSE |
Parental | DLPLNISREMLQQSKILKVIRK-NLVKKCLELFTELAEDKENYKKFYEQFSKNIKLGIHEDSQNRKKLSE |
DLPLNIS.EMLQ.SKILK.IRK.N.V.KCL.L..ELAEDKENY.KFYE.FSKN.K.GIHEDS.N...LSE | |
Retrocopy | DLPLNISQEMLQ*SKILKIIRK<NIVNKCLVLLSELAEDKENYRKFYEAFSKNLKHGIHEDSTNQCHLSE |
Parental | LLRYYTSASGDEMVSLKDYCTRMKENQKHIYYITGETKDQVANSAFVERLRKHGLEVIYMIEPIDEYCVQ |
LL...TS.SGDEM.SL..Y....KE.QK.IYYITGE.K.QVANSAFVE..RK.G.EV.YM.EPID.YCVQ | |
Retrocopy | LLHDHTSQSGDEMTSLSEYVSHIKETQKSIYYITGESKEQVANSAFVE*VRKWGFEVVYMTEPIDDYCVQ |
Parental | QLKEFEGKTLVSVTKEGLELPEDEEEKKKQEEKKTKFENLCKIMKDILEKKVEKVVVSNRLVTSPCCIVT |
.LK.F..K.LVSVTKEGLELPEDEEEKKK.EE.K.KFENLCK.MK.IL..KVEKV..SNRLV.SPCCIVT | |
Retrocopy | ELKKFDRKSLVSVTKEGLELPEDEEEKKKMEESKAKFENLCKLMKEILD*KVEKVTISNRLVSSPCCIVT |
Parental | STYGWTANMERIMKAQALRDNSTMGYMAAKKHLEINPD |
STYGWT.NME.IMKAQAL.DNSTMGYM.A.KHLEINPD | |
Retrocopy | STYGWTVNMEWIMKAQALQDNSTMGYMVARKHLEINPD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .27 RPM | 168 .69 RPM |
SRP051959_heart | 0 .35 RPM | 217 .01 RPM |
SRP051959_kidney | 0 .24 RPM | 145 .21 RPM |
SRP051959_liver | 0 .43 RPM | 269 .35 RPM |
SRP051959_lung | 0 .46 RPM | 194 .35 RPM |
SRP051959_lymph_node | 0 .32 RPM | 189 .24 RPM |
SRP051959_skeletal_muscle | 0 .57 RPM | 221 .48 RPM |
SRP051959_spleen | 0 .34 RPM | 164 .20 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000006270 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000018036 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000033945 | 8 retrocopies |
retro_cjac_1818, retro_cjac_2300, retro_cjac_2835, retro_cjac_3514, retro_cjac_3596 , retro_cjac_3601, retro_cjac_3626, retro_cjac_502,
|
Cavia porcellus | ENSCPOG00000002015 | 1 retrocopy | |
Homo sapiens | ENSG00000080824 | 2 retrocopies | |
Macaca mulatta | ENSMMUG00000011073 | 2 retrocopies | |
Monodelphis domestica | ENSMODG00000013302 | 3 retrocopies | |
Mus musculus | ENSMUSG00000021270 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000015925 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000006153 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000006736 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000007219 | 1 retrocopy |