Parental gene:

HSP90AA1, ENSPTRG00000006736

Aliases:None
Description:Pan troglodytes heat shock protein 90kDa alpha (cytosolic), class A member 1 (HSP90AA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001098572]
Organism:Chimpanzee (Pan troglodytes)
Coordinates:14:101778470..101784874(-)


>ENSPTRG00000006736
ATGCCTGAGGAAACCCAGACCCAAGACCAACCGATGGAGGAGGAGGAGGTTGAGACTTTCGCCTTTCAGGCAGAAATTGC
CCAGTTGATGTCATTGATCATCAATACTTTCTACTCGAACAAAGAGATCTTTCTGAGAGAGCTCATTTCAAATTCATCAG
ATGCGTTGGACAAAATCCGGTATGAAAGCTTGACAGATCCCAGTAAATTAGACTCTGGGAAAGAGCTGCATATTAACCTT
ATACCGAACAAACAAGATCGAACCCTCACTATTGTGGATACTGGAATTGGAATGACCAAGGCTGACTTGATCAATAACCT
TGGTACTATCGCCAAGTCTGGGACCAAAGCGTTCATGGAAGCTTTGCAGGCTGGTGCAGATATCTCTATGATTGGCCAGT
TCGGTGTTGGTTTTTATTCTGCTTATTTGGTTGCTGAGAAAGTAACTGTGATCACCAAACATAATGATGATGAGCAGTAC
GCTTGGGAGTCCTCAGCAGGGGGATCATTCACAGTGAGGACAGACACAGGTGAACCTATGGGTCGTGGAACAAAAGTTAT
CCTACACCTGAAAGAAGACCAAACTGAGTACTTGGAGGAACGAAGAATAAAGGAGATTGTGAAGAAACATTCTCAGTTTA
TTGGATATCCCATTACTCTTTTTGTGGAGAAGGAACGTGATAAAGAAGTCAGCGATGATGAGGCTGAAGAAAAGGAAGAC
AAAGAAGAAGAAAAAGAAAAAGAAGAGAAAGAGTCGGAAGACAAACCTCAAATTGAAGATGTTGGTTCTGATGAGGAAGA
AGAAGAAAAGAAGGATGGTGACAAGAAGAAGAAGAAGAAGATTAAGGAAAAGTACATCGATCAAGAAGAGCTCAACAAAA
CAAAGCCCATCTGGACCAGAAATCCCGACGATATTACTAATGAGGAGTACGGAGAATTCTATAAGAGCTTGACCAATGAC
TGGGAAGATCACTTGGCAGTGAAGCATTTTTCAGTTGAAGGACAGTTGGAATTCAGAGCCCTTCTATTTGTCCCACGACG
TGCTCCTTTTGATCTGTTTGAAAACAGAAAGAAAAAGAACAACATCAAATTGTATGTACGCAGAGTTTTCATCATGGATA
ACTGTGAGGAGCTAATCCCTGAGTATCTGAACTTCATTAGAGGGGTGGTAGACTCGGAGGACCTCCCTCTAAACATTTCC
CGTGAGATGTTGCAACAAAGCAAAATTTTGAAAGTTATCAGGAAGAATTTGGTCAAAAAATGCTTAGAACTTTTTACTGA
ACTGGCGGAAGATAAAGAGAACTACAAGAAATTCTATGAGCAGTTCTCTAAAAACATAAAGCTTGGAATACACGAAGACT
CTCAAAATCGGAAGAAGCTTTCAGAGCTGTTAAGGTACTACACATCTGCCTCTGGTGATGAGATGGTTTCTCTCAAGGAC
TACTGCACCAGAATGAAGGAGAACCAGAAACATATCTATTATATCACAGGTGAGACCAAGGACCAGGTAGCTAACTCAGC
CTTTGTGGAACGTCTTCGGAAACACGGCTTAGAAGTGATCTATATGATTGAGCCCATTGATGAGTACTGTGTCCAACAGC
TGAAGGAATTTGAGGGGAAGACTTTAGTGTCAGTCACCAAAGAAGGCCTGGAACTTCCAGAGGATGAAGAAGAGAAAAAG
AAACAGGAAGAGAAAAAAACAAAGTTTGAGAACCTCTGCAAAATCATGAAAGACATACTGGAGAAAAAAGTTGAAAAGGT
GGTTGTGTCAAACCGATTGGTGACATCTCCATGCTGTATTGTCACAAGCACATATGGCTGGACAGCAAACATGGAGAGAA
TCATGAAAGCTCAAGCCCTAAGAGACAACTCAACAATGGGTTACATGGCAGCAAAGAAACACCTGGAGATAAACCCTGAC
CATTCCATTATTGAGACCTTAAGGCAAAAGGCAGAGGCTGATAAGAACGACAAGTCTGTGAAGGATCTGGTCATCTTGCT
TTATGAAACTGCGCTCCTGTCTTCTGGCTTCAGTCTGGAAGATCCCCAGACACATGCTAACAGGATCTACAGGATGATCA
AACTTGGTCTGGGTATTGATGAAGATGACCCTACTGCTGATGATACCAGTGCTGCTGTAACTGAAGAAATGCCACCCCTT
GAAGGAGATGACGACACATCACGCATGGAAGAAGTAGACTAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 1070 .46 RPM
SRP007412_cerebellum 836 .99 RPM
SRP007412_heart 692 .34 RPM
SRP007412_kidney 1038 .98 RPM
SRP007412_liver 494 .25 RPM
SRP007412_testis 2686 .54 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000006270 ortholog_one2one 1 retrogene
retro_btau_501,
Callithrix jacchus ENSCJAG00000033945 possible_ortholog 8 retrogenes
retro_cjac_1818, retro_cjac_2300, retro_cjac_2835, retro_cjac_3514, retro_cjac_3596, retro_cjac_3601, retro_cjac_3626, retro_cjac_502,
Cavia porcellus ENSCPOG00000002015 ortholog_one2one 1 retrogene
retro_cpor_1372,
Homo sapiens ENSG00000080824 ortholog_one2one 2 retrogenes
retro_hsap_237, retro_hsap_859,
Monodelphis domestica ENSMODG00000013302 ortholog_one2many 3 retrogenes
retro_mdom_1653, retro_mdom_2010, retro_mdom_817,
Mus musculus ENSMUSG00000021270 ortholog_one2one 1 retrogene
retro_mmus_2139,
Nomascus leucogenys ENSNLEG00000015925 ortholog_one2one 3 retrogenes
retro_nleu_714, retro_nleu_822, retro_nleu_854,
Pongo abelii ENSPPYG00000006153 possible_ortholog 1 retrogene
retro_pabe_1760,
Pan troglodytes ENSPTRG00000005372 within_species_paralog 1 retrogene
retro_ptro_170,
Pan troglodytes ENSPTRG00000018217 within_species_paralog 4 retrogenes
retro_ptro_1850, retro_ptro_1968, retro_ptro_2003, retro_ptro_880,
Rattus norvegicus ENSRNOG00000007219 ortholog_one2one 1 retrogene
retro_rnor_860,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_207 83.37 61.26
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_ptro_596 88.01 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPTRG00000006736 retrocopies