Parental gene:

DNAJC8, ENSBTAG00000018385

Aliases:None
Description:None
Organism:Cow (Bos taurus)
Coordinates:2:125733244..125757519(+)


>ENSBTAG00000018385
TCACGTGGTCGCTGGGCCGGGGAAATGGCGGCTCCAGGAGAGAGCGGGGCTTCGGGTGGAGGAGGCAGCACGGAGGAAGC
ATTTATGACCTTCTACAGTGAGGTGAAACAAATAGAGAAGAGAGATTCAGTTCTAACGTCCAAAAATCAGATTGAAAGAT
TGACTCGTCCTGGTTCCTCCTACTTCAATTTGAACCCGTTTGAGGTTCTTCAGATAGATCCTGAAGTGACAGATGAAGAA
ATAAAAAAGAGGTTTCGGCAGTTATCCATACTGGTGCATCCTGACAAAAATCAAGATGATGCTGACAGAGCACAAAAGGC
TTTTGAAGCTGTGGACAAAGCTTACAAGTTGCTACTGGATCAGGAACAAAAGAAGAGGGCCCTGGATGTAATTCAGGCAG
GAAAAGAATACGTGGAACACACCGTGAAAGAGCGAAAAAAGCAATTAAAGAAGGAAGGAAAGCCTACAAATGTGGAGGAG
GATGACCCTGAGCTGTTCAAACAAGCAGTATACAAACAGACAATGAAACTCTTTGCTGAGCTGGAAATTAAAAGGAAAGA
GAGAGAAGCCAAAGAGATGCATGAAAGGAAGCGACAACGGGAGGAAGAGATTGAAGCTCAAGAAAAAGCCAAACGAGAAA
GGGAGTGGCAGAAAAATTTTGAGGAAAGTCGAGATGGTCGCGTGGACAGCTGGCGAAACTTCCAAGCCAATACGAAAGGA
AAGAAAGAGAAGAAAAACCGGACCTTCCTGAGACCACCAAAAGTAAAAATGGAGCAGCGTGAGTGA

Library Parental gene expression (RPM)
ERP005899_liver 14 .49 RPM
ERP005899_muscle 23 .81 RPM
SRP017611_brain 25 .40 RPM
SRP017611_kidney 25 .31 RPM
SRP017611_liver 8 .61 RPM
SRP030211_testis 38 .77 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011231 ortholog_one2one 1 retrogene
retro_amel_703,
Canis familiaris ENSCAFG00000011885 ortholog_one2one 2 retrogenes
retro_cfam_1506, retro_cfam_1663,
Choloepus hoffmanni ENSCHOG00000009649 ortholog_one2one 1 retrogene
retro_chof_1545,
Dasypus novemcinctus ENSDNOG00000015452 ortholog_one2one 2 retrogenes
retro_dnov_133, retro_dnov_914,
Erinaceus europaeus ENSEEUG00000011136 ortholog_one2one 2 retrogenes
retro_eeur_536, retro_eeur_638,
Echinops telfairi ENSETEG00000008348 ortholog_one2one 4 retrogenes
retro_etel_374, retro_etel_502, retro_etel_745, retro_etel_846,
Felis catus ENSFCAG00000013393 ortholog_one2one 1 retrogene
retro_fcat_203,
Homo sapiens ENSG00000126698 ortholog_one2one 3 retrogenes
retro_hsap_1319, retro_hsap_2840, retro_hsap_4119,
Gorilla gorilla ENSGGOG00000000821 ortholog_one2one 2 retrogenes
retro_ggor_1030, retro_ggor_2766,
Microcebus murinus ENSMICG00000001222 ortholog_one2one 5 retrogenes
retro_mmur_1152, retro_mmur_1355, retro_mmur_343, retro_mmur_601, retro_mmur_935,
Macaca mulatta ENSMMUG00000017080 ortholog_one2many 4 retrogenes
retro_mmul_2004, retro_mmul_2078, retro_mmul_2168, retro_mmul_228,
Mustela putorius furo ENSMPUG00000015540 ortholog_one2one 1 retrogene
retro_mputfur_202,
Mus musculus ENSMUSG00000054405 ortholog_one2one 1 retrogene
retro_mmus_916,
Nomascus leucogenys ENSNLEG00000009762 ortholog_one2one 3 retrogenes
retro_nleu_1401, retro_nleu_1594, retro_nleu_2701,
Otolemur garnettii ENSOGAG00000015597 ortholog_one2many 4 retrogenes
retro_ogar_2422, retro_ogar_2595, retro_ogar_3219, retro_ogar_84,
Pongo abelii ENSPPYG00000025833 ortholog_one2many 2 retrogenes
retro_pabe_2351, retro_pabe_3382,
Pelodiscus sinensis ENSPSIG00000017721 ortholog_one2one 1 retrogene
retro_psin_34,
Pteropus vampyrus ENSPVAG00000017619 ortholog_one2one 1 retrogene
retro_pvam_1057,
Rattus norvegicus ENSRNOG00000013255 ortholog_one2many 1 retrogene
retro_rnor_488,
Ictidomys tridecemlineatus ENSSTOG00000012834 ortholog_one2one 2 retrogenes
retro_itri_1361, retro_itri_1775,
Tarsius syrichta ENSTSYG00000007057 ortholog_one2one 3 retrogenes
retro_tsyr_137, retro_tsyr_1389, retro_tsyr_885,
Tursiops truncatus ENSTTRG00000000047 ortholog_one2one 1 retrogene
retro_ttru_1430,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_794 96.92 99.23
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2. retro_btau_1332 68.84 52.11
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Download FASTA sequences of all ENSBTAG00000018385 retrocopies