Parental gene:

MMU.4981, ENSMMUG00000017080

Aliases:None
Description:dnaJ homolog subfamily C member 8 [Source:RefSeq peptide;Acc:NP_001247983]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:1:30894449..30925053(-)


>ENSMMUG00000017080
ATGGCGGCTTCAGGAGAGAGCGGGACTTCGGGCAGCGGAGGCAGCACCGAGGAAGCCTTTATGACCTTCTACAGTGAGGT
GAAACAAATAGAGAAAAGAGACTCGGTTCTAACATCGAAAAATCAGATTGAAAGACTGACCCGTCCTGGTTCCTCTTACT
TCAATTTGAACCCATTTGAGGTTCTTCAGATAGATCCTGAAGTTACAGATGAGGAAATAAAAAAGAGGTTTCGGCAGTTA
TCCATCTTGGTGCATCCTGACAAAAATCAAGATGATGCTGACAGAGCACAAAAGGCTTTTGAAGCTGTGGACAAAGCTTA
CAAGTTGCTACTGGATCAGGAGCAAAAGAAGAGGGCCCTGGATGTAATTCAGGCAGGAAAAGAATACGTGGAACACACTG
TGAAAGAGCGAAAAAAACAGTTAAAGAAGGAAGGAAAACCTACAATTGTAGAGGAGGATGATCCTGAACTGTTCAAACAA
GCTGTATATAAACAGACAATGAAACTCTTTGCTGAGCTGGAAATTAAAAGGAAAGAGAGAGAAGCCAAAGAGATGCATGA
AAGGAAACGACAAAGGGAAGAAGAGATTGAAGCTCAAGAAAAAGCCAAACGGGAAAGAGAGTGGCAGAAAAACTTTGAGG
AAAGTCGAGATGGTCGTGTGGACAGCTGGCGAAACTTCCAAGCCAATACAAAGGGGAAGAAAGAGAAGAAAAATCGGACC
TTCCTGAGACCACCAAAAGTAAAAATGGAGCAGCGTGAGTGA

Library Parental gene expression (RPM)
SRP007412_brain 10 .08 RPM
SRP007412_brain_prefrontal_cortex 31 .57 RPM
SRP007412_cerebellum 10 .72 RPM
SRP007412_heart 8 .77 RPM
SRP007412_kidney 6 .46 RPM
SRP007412_liver 2 .81 RPM
SRP007412_testis 8 .33 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000011231 ortholog_one2many 1 retrogene
retro_amel_703,
Bos taurus ENSBTAG00000018385 ortholog_one2many 2 retrogenes
retro_btau_1332, retro_btau_794,
Canis familiaris ENSCAFG00000011885 ortholog_one2many 2 retrogenes
retro_cfam_1506, retro_cfam_1663,
Choloepus hoffmanni ENSCHOG00000009649 ortholog_one2many 1 retrogene
retro_chof_1545,
Dasypus novemcinctus ENSDNOG00000015452 ortholog_one2many 2 retrogenes
retro_dnov_133, retro_dnov_914,
Erinaceus europaeus ENSEEUG00000011136 ortholog_one2many 2 retrogenes
retro_eeur_536, retro_eeur_638,
Echinops telfairi ENSETEG00000008348 ortholog_one2many 4 retrogenes
retro_etel_374, retro_etel_502, retro_etel_745, retro_etel_846,
Felis catus ENSFCAG00000013393 ortholog_one2many 1 retrogene
retro_fcat_203,
Homo sapiens ENSG00000126698 ortholog_one2many 3 retrogenes
retro_hsap_1319, retro_hsap_2840, retro_hsap_4119,
Gorilla gorilla ENSGGOG00000000821 ortholog_one2many 2 retrogenes
retro_ggor_1030, retro_ggor_2766,
Microcebus murinus ENSMICG00000001222 ortholog_one2many 5 retrogenes
retro_mmur_1152, retro_mmur_1355, retro_mmur_343, retro_mmur_601, retro_mmur_935,
Mustela putorius furo ENSMPUG00000015540 ortholog_one2many 1 retrogene
retro_mputfur_202,
Mus musculus ENSMUSG00000054405 ortholog_one2many 1 retrogene
retro_mmus_916,
Nomascus leucogenys ENSNLEG00000009762 ortholog_one2many 3 retrogenes
retro_nleu_1401, retro_nleu_1594, retro_nleu_2701,
Otolemur garnettii ENSOGAG00000015597 ortholog_many2many 4 retrogenes
retro_ogar_2422, retro_ogar_2595, retro_ogar_3219, retro_ogar_84,
Pongo abelii ENSPPYG00000025833 ortholog_one2many 2 retrogenes
retro_pabe_2351, retro_pabe_3382,
Pelodiscus sinensis ENSPSIG00000017721 ortholog_one2many 1 retrogene
retro_psin_34,
Pteropus vampyrus ENSPVAG00000017619 ortholog_one2many 1 retrogene
retro_pvam_1057,
Rattus norvegicus ENSRNOG00000013255 ortholog_many2many 1 retrogene
retro_rnor_488,
Ictidomys tridecemlineatus ENSSTOG00000012834 ortholog_one2many 2 retrogenes
retro_itri_1361, retro_itri_1775,
Tarsius syrichta ENSTSYG00000007057 ortholog_one2many 3 retrogenes
retro_tsyr_137, retro_tsyr_1389, retro_tsyr_885,
Tursiops truncatus ENSTTRG00000000047 ortholog_one2many 1 retrogene
retro_ttru_1430,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_228 97.23 100.00
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2. retro_mmul_2004 91.70 100.00
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3. retro_mmul_2078 94.94 100.00
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4. retro_mmul_2168 94.38 69.96
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Download FASTA sequences of all ENSMMUG00000017080 retrocopies