Parental gene:

RPL10A, ENSBTAG00000019494

Aliases:None
Description:60S ribosomal protein L10a [Source:UniProtKB/Swiss-Prot;Acc:Q5E9E6]
Organism:Cow (Bos taurus)
Coordinates:23:9391522..9394013(+)


>ENSBTAG00000019494
ATGAGCAGCAAAGTCTCCCGCGACACCCTCTACGAGGCGGTGCGGGAAGTCCTGCACGGGAATCAGCGCAAGCGCAGAAA
GTTTTTGGAGACGGTGGAGCTTCAGATCAGCCTGAAGAACTATGACCCTCAGAAGGACAAACGCTTCTCGGGCACCGTCA
GGCTTAAGTCCACTCCCCGCCCCAAGTTCTCCGTGTGTGTCTTGGGGGACCAGCAGCATTGTGATGAGGCCAAGGCTGTG
GATATCCCCCACATGGACATCGAGGCGCTGAAAAAACTCAACAAGAATAAGAAACTGGTCAAGAAGCTGGCCAAGAAATA
TGATGCCTTTTTGGCTTCAGAGTCTCTGATCAAGCAGATCCCCCGAATCCTGGGCCCGGGCCTGAACAAGGCTGGCAAGT
TCCCTTCCTTGCTGACCCACAATGAGAACATGGTGGCCAAAGTTGATGAAGTGAAGTCCACGATCAAGTTCCAGATGAAG
AAGGTGCTGTGTCTGGCAGTGGCTGTTGGCCACGTGAAGATGACAGATGATGAGCTTGTGTACAACATCCACTTAGCTGT
CAACTTCCTGGTGTCATTGCTCAAGAAAAATTGGCAGAACGTCAGGGCCTTGTACATTAAGAGCACCATGGGCAAGCCCC
AGCGTCTGTACTAA

Library Parental gene expression (RPM)
ERP005899_liver 71 .95 RPM
ERP005899_muscle 878 .62 RPM
SRP017611_brain 58 .88 RPM
SRP017611_kidney 153 .22 RPM
SRP017611_liver 130 .48 RPM
SRP030211_testis 62 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Dasypus novemcinctus ENSDNOG00000012921 ortholog_one2one 3 retrogenes
retro_dnov_157, retro_dnov_1917, retro_dnov_469,
Macropus eugenii ENSMEUG00000005760 ortholog_one2many 6 retrogenes
retro_meug_1337, retro_meug_1578, retro_meug_2066, retro_meug_407, retro_meug_541, retro_meug_705,
Monodelphis domestica ENSMODG00000013766 ortholog_one2many 2 retrogenes
retro_mdom_276, retro_mdom_499,
Mus musculus ENSMUSG00000037805 ortholog_one2one 8 retrogenes
retro_mmus_1110, retro_mmus_1304, retro_mmus_1422, retro_mmus_149, retro_mmus_1737, retro_mmus_2038, retro_mmus_2652, retro_mmus_452,
Ornithorhynchus anatinus ENSOANG00000014574 ortholog_one2many 1 retrogene
retro_oana_86,
Sarcophilus harrisii ENSSHAG00000002047 ortholog_one2many 1 retrogene
retro_shar_438,
Sus scrofa ENSSSCG00000001543 possible_ortholog 7 retrogenes
retro_sscr_1169, retro_sscr_1174, retro_sscr_120, retro_sscr_246, retro_sscr_379, retro_sscr_461, retro_sscr_465,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_87 97.70 100.00
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2. retro_btau_138 97.70 100.00
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3. retro_btau_1501 66.83 94.47
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4. retro_btau_1634 83.33 71.43
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Download FASTA sequences of all ENSBTAG00000019494 retrocopies