Parental gene:

RPL10A, ENSSSCG00000001543

Aliases:None
Description:Sus scrofa ribosomal protein L10a (RPL10A), mRNA. [Source:RefSeq mRNA;Acc:NM_001097477]
Organism:Pig (Sus scrofa)
Coordinates:7:36106601..36108831(-)


>ENSSSCG00000001543
ATGACCCACAGAAGGACAAACGCTTCTCGGGCACCGTCAGGCTTAAGTCTACTCCCCGCCCCATTCTCCGTGTGTGTCCT
GGGAGACCAGCAGCATTGTGATGAGGCCAAGGCTGTGGATATCCCGCACATGGACATCGAGGCACTGAAGAAACTCAACA
AGAATAAGAAACTGGTCAAGAAGCTGGCCAAGAAGTATGATGCCTTTTTGGCTTCAGAATCTCTAATCAAGCAGATTCCA
CGAATCCTGGGCCCTGGCCTGAATAAGGCTGGCAAATTCCCTTCCTTGCTGACCCACAATGAGAACATGGTGGCCAAAGT
TGATGAAGTGAAGTCCACGATCAAGTTCCAGATGAAGAAGGTGCTGTGTCTGGCAGTGGCTGTTGGCCACGTGAAGATGA
CAGATGATGAGCTTGTGTACAACATCCACTTAGCTGTCAACTTCCTGGTGTCATTGCTCAAGAAAAATTGGCAGAACGTC
CGGGCTTTGTACATTAAGAGCACCATGGGCAAGCCCCAGCGCCTATACTAA

Library Parental gene expression (RPM)
SRP014902_placenta 412 .66 RPM
SRP014902_testis 595 .91 RPM
SRP018288_heart 480 .18 RPM
SRP018288_kidney 296 .50 RPM
SRP018288_liver 235 .55 RPM
SRP018288_lung 299 .98 RPM
SRP018856_adipose 773 .63 RPM
SRP035408_brain 256 .82 RPM
SRP035408_liver 287 .98 RPM



Species Parental gene accession Homology type Retrogenes number
Bos taurus ENSBTAG00000019494 possible_ortholog 4 retrogenes
retro_btau_138, retro_btau_1501, retro_btau_1634, retro_btau_87,
Dasypus novemcinctus ENSDNOG00000012921 possible_ortholog 3 retrogenes
retro_dnov_157, retro_dnov_1917, retro_dnov_469,
Equus caballus ENSECAG00000014090 possible_ortholog 2 retrogenes
retro_ecab_512, retro_ecab_517,
Macropus eugenii ENSMEUG00000005760 ortholog_one2many 6 retrogenes
retro_meug_1337, retro_meug_1578, retro_meug_2066, retro_meug_407, retro_meug_541, retro_meug_705,
Microcebus murinus ENSMICG00000012458 possible_ortholog 3 retrogenes
retro_mmur_1381, retro_mmur_384, retro_mmur_93,
Monodelphis domestica ENSMODG00000013766 ortholog_one2many 2 retrogenes
retro_mdom_276, retro_mdom_499,
Mus musculus ENSMUSG00000037805 possible_ortholog 8 retrogenes
retro_mmus_1110, retro_mmus_1304, retro_mmus_1422, retro_mmus_149, retro_mmus_1737, retro_mmus_2038, retro_mmus_2652, retro_mmus_452,
Ornithorhynchus anatinus ENSOANG00000014574 ortholog_one2many 1 retrogene
retro_oana_86,
Pongo abelii ENSPPYG00000016529 possible_ortholog 10 retrogenes
retro_pabe_1208, retro_pabe_1597, retro_pabe_2614, retro_pabe_2759, retro_pabe_3302, retro_pabe_3315, retro_pabe_3377, retro_pabe_357, retro_pabe_451, retro_pabe_475,
Sarcophilus harrisii ENSSHAG00000002047 ortholog_one2many 1 retrogene
retro_shar_438,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_120 90.23 97.16
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2. retro_sscr_246 69.52 59.66
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3. retro_sscr_379 80.13 88.07
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4. retro_sscr_461 83.43 100.00
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5. retro_sscr_465 73.27 56.82
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6. retro_sscr_1169 75.48 86.93
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7. retro_sscr_1174 78.69 68.18
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Download FASTA sequences of all ENSSSCG00000001543 retrocopies