Parental gene:

EIF4B, ENSCAFG00000007117

Aliases:None
Description:eukaryotic translation initiation factor 4B [Source:HGNC Symbol;Acc:3285]
Organism:Dog (Canis familiaris)
Coordinates:27:2120126..2150322(-)


>ENSCAFG00000007117
ATGGCGGCCTCAGCAAAAAAGAAGAATAAGAAGGGGAAAACTATCTCCCTAACAGACTTTCTGGCTGAGGATGGAGGGAC
TGGGGGAGGAAGCACCTATGTCCCCAAACCAGTCAGCTGGGCTGATGAAACAGACGACCTGGAAGGAGATGTTTCAACCA
CTTGGCACAGTAATGACGATGACGTGTATAGGGCACCTCCAATTGACCGTTCCATCCTGCCCACTGCTCCACGGGCTGCT
CGGGAACCCAATATCGACCGGAGCCGTCTTCCAAAATCGCCACCCTATACTGCTTTTCTAGGGAACCTGCCCTATGATGT
CACAGAAGATTCCATTAAGGAATTCTTTAGAGGATTAAATATCAGTGCAGTGCGTTTACCACGTGAACCCAGCAATCCAG
AGAGGTTGAAAGGTTTTGGTTACGCTGAGTTTGAGGACCTGGATTCTTTGCTCAGTGCCCTGAGCCTCAACGAAGAGTCT
CTAGGTAACAGGAGAATTCGAGTGGACGTTGCTGATCAAGCACAGGATAAAGACAGGGATGATCGTTCCTTTGGCCGAGA
TAGAAATCGGGATTCTGACAAAACAGATACAGACTGGAGGGCGCGTCCTGCCACAGACAGCTTCGATGACTACCCACCTA
GGAGAGGTGATGATAGCTTTGGAGACAAGTATCGAGACCGTTACGATTCAGACCGATACCGTGATGGATATCGGGATGGG
TATCGTGATGGTCCACGCCGAGATATGGACAGATATGGAGGCCGGGATCGCTATGATGACCGAGGCAGCCGAGACTATGA
CAGAGGCTACGATTCCAGGATAGGCAGTGGCAGAAGAGCATTTGGTAGTGGGTACCGAAGGGATGACGACTACAGAGGAG
GCGGGGACCGCTATGAAGACAGATACGACAGGCGAGACGATCGGTCCTGGAGCTCCAGAGATGATTACTCTCGGGATGAC
TATAGGCGTGATGATAGAGGTCCCCCCCAAAGACCCAAACTGAATCTAAAGCCTCGGAGTACTCCTAAGGAAGATGATTC
CTCCGCTAGCACCTCCCAGTCCAGTCGAGCGGCCTCTATCTTTGGAGGGGCAAAGCCTGTTGACACAGCTGCTAGAGAGC
GAGAAGTAGAAGAGCGGCTGCAGAAGGAGCAGGAGAAGCTGCAGCGCCAGCTGGATGAGCCAAAACTAGAGCGACGGCCT
CGAGAGAGACACCCAAGCTGGCGAAGTGAAGAGACTCAGGAACGGGAACGGTCCAGGACAGGAAGTGAGTCATCACAGAC
TGGGACCTCGGCCACAACTGGCAGAAATGCACGAAGGAGAGAGAGTGAGAAGTCTCTAGAAAATGAAACACCGAATAAGG
AGGAAGACTGTCACTCTCCGACTTCTAAGCCACCCAAATCTGAACAGCCTCTGAAGGTAATGCCAGCCCCTCCACCAAAG
GAGAATGCTTGGGTGAAGCGAAGTTCTAACCCTCCTGCCCGATCTCAGAGCTCGGACACAGAGCAACAGTCCCCCACGAG
TGGTGGAGGGAAAGCAGTCCCGGCTCAGCCCCCGGAGGAAGGACCAGCAAGGAGAGCAGATGAAAACAAAGTAGATGGGG
TGAGTGTCCCAAAAGGCCACAGTGGGAACTCCAGCCGTGGTCCAGGAGACGGAGGGAACAAAGACCACTGGAAGGAGCCA
GACAGGAAAGACGGCAAAAAGGATCAAGACTCCCGATCTGCACCTGAGCCAAAGAAACCTGAAGAAAATCCAGCTTCCAA
GTTCAGTTCTGCAAGCAAGTATGCTGCTCTCTCCATTGATGGTGAAGATGAGAACGAGGGAGAAGATTACACCGAATAG

Library Parental gene expression (RPM)
SRP017611_brain 109 .32 RPM
SRP017611_kidney 443 .97 RPM
SRP017611_liver 426 .02 RPM
SRP012049_cerebellum 226 .16 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000012023 ortholog_one2one 2 retrogenes
retro_amel_1107, retro_amel_559,
Choloepus hoffmanni ENSCHOG00000001608 ortholog_one2one 2 retrogenes
retro_chof_1310, retro_chof_366,
Cavia porcellus ENSCPOG00000005595 possible_ortholog 3 retrogenes
retro_cpor_278, retro_cpor_752, retro_cpor_937,
Gorilla gorilla ENSGGOG00000013695 possible_ortholog 5 retrogenes
retro_ggor_1233, retro_ggor_1263, retro_ggor_1882, retro_ggor_1883, retro_ggor_3024,
Loxodonta africana ENSLAFG00000009534 ortholog_one2one 1 retrogene
retro_lafr_294,
Macropus eugenii ENSMEUG00000012341 ortholog_one2one 2 retrogenes
retro_meug_1054, retro_meug_585,
Macaca mulatta ENSMMUG00000001062 possible_ortholog 5 retrogenes
retro_mmul_1428, retro_mmul_2384, retro_mmul_2589, retro_mmul_731, retro_mmul_783,
Mus musculus ENSMUSG00000058655 ortholog_one2one 1 retrogene
retro_mmus_3686,
Rattus norvegicus ENSRNOG00000010103 ortholog_one2many 2 retrogenes
retro_rnor_2467, retro_rnor_2972,
Tarsius syrichta ENSTSYG00000012880 ortholog_one2one 1 retrogene
retro_tsyr_452,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_936 77.18 52.94
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2. retro_cfam_1447 77.90 58.33
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Download FASTA sequences of all ENSCAFG00000007117 retrocopies