Parental gene: | MMU.9577, ENSMMUG00000001062 |
| Aliases: | None |
| Description: | eukaryotic translation initiation factor 4B [Source:RefSeq peptide;Acc:NP_001182737] |
| Organism: | Rhesus macaque (Macaca mulatta) |
| Coordinates: | 11:50077601..50100758(+) |
>ENSMMUG00000001062
TTTAAAACAGCAAAAAAGAAGAATAAGAAGGGGAAGACTATCTCCCTAACAGACTTTCTGGCTGAGGATGGGGGTACTGG
TGGAGGAAGCACCTATGTTTCCAAACCAGTCAGCTGGGCTGATGAAACGGATGACCTGGAAGGAGATGTTTCAACAACGT
GGCACAGTAATGACGACGATGTGTACAGGGCGCCTCCAATTGACCGTTCCATCCTTCCCACTGCTCCACGGGCTGCTCGG
GAACCCAATATCGACCGGAGCCGTCTTCCCAAATCGCCACCCTACACTGCTTTTCTAGGGAACCTACCCTATGATGTGAC
AGAAGAATCAATTAAGGAATTCTTTAGAGGATTAAATATCAGTGCAGTGCGTTTACCACGTGAACCCAGCAATCCAGAGA
GGTTGAAAGGTTTTGGTTATGCTGAATTTGAGGACCTGGATTCCCTGCTCAGTGCCCTGAGTCTCAATGAAGAGTCTCTA
GGTAACAGGAGAATTCGAGTGGACGTTGCTGATCAAGCACAGGATAAAGACAGGGATGATCGTTCTTTTGGCCGTGATAG
AAATCGGGATTCTGACAAAACAGATACAGACTGGAGGGCTCGTCCTGCTACAGACAGCTTTGATGACTACCCACCTAGAA
GAGGTGATGATAGCTTTGGAGACAAGTATCGAGATCGTTATGATTCAGACCGGTATCGGGATGGGTATCGGGATGGCCCA
CGCCGGGATATGGATCGATATGGTGGCCGGGATCGCTATGATGACCGAGGCAGCAGAGACTATGATAGAGGCTATGAATC
CCGGATAGGCAGTGGCAGAAGAGCATTTGGCAGTGGGTATCGCAGGGATGATGACTACAGAGGAGGCGGGGACCGCTATG
AAGACCGATACGACAGACGGGATGATCGGTCGTGGAGCTCCAGAGATGATTACTCTCGGGATGATTATAGGCGCGATGAC
AGAGGTCCCCCTCAAAGACCCAAACTGAATCTAAAGCCTCGGAGTACTCCTAAGGAAGATGATTCCTCTGCTAGTACCTC
CCAGTCCAGTCGAGCTGCTTCTATCTTTGGAGGGGCAAAGCCTGTTGACACAGCTGCTAGAGAAAGAGAAGTAGAAGAAC
GGCTACAGAAGGAACAAGAGAAGTTGCAGCGTCAGCTGGATGAGCCAAAACTAGAACGACGGCCTCGGGAGAGACACCCA
AGCTGGCGAAGTGAAGAAACTCAGGAACGGGAACGGTCGAGGACAGGAAGTGAGTCATCACAGACTGGGACCTCCGCCAC
ATCTGGCAGAAATGCACGAAGGAGAGAGAGTGAGAAGTCTCTAGAAAATGAAACACTCAATAAGGAGGAAGATTGTCACT
CTCCAACTTCTAAACCTCCCAAACCTGATCAGCCCCTAAAGGTAATGCCAGCCCCTCCACCAAAGGAGAATGCTTGGGTG
AAGCGAAGTTCTAACCCTCCAGCTCGATCTCAGAGCTCAGACACAGAGCAGCAATCCCCTACAAGTGGTGGGGGAAAAGT
AGCTCCAGCTCAACCATCTGAGGAAGGACCAGCAAGGAAAGATGAAAATAAAGTAGATGGGATGAATGTCCCAAAAGGCC
AAACTGGGACCTCTAGCCGTGGACCAGGAGACGGAGGGAACAAAGACCACTGGAAGGAGTCAGATAGGAAAGATGGCAAA
AAGGATCAAGACTCCAGATCTGCACCTGAGCCAAAGAAACCTGAGGAAAATCCAGCTTCGAAGTTCAGTTCTGCAAGCAA
GTATGCTGCTCTCTCTGTTGATGGTGAAGATGAAAACGAGGGAGAAGATTATGCCGAATAG
TTTAAAACAGCAAAAAAGAAGAATAAGAAGGGGAAGACTATCTCCCTAACAGACTTTCTGGCTGAGGATGGGGGTACTGG
TGGAGGAAGCACCTATGTTTCCAAACCAGTCAGCTGGGCTGATGAAACGGATGACCTGGAAGGAGATGTTTCAACAACGT
GGCACAGTAATGACGACGATGTGTACAGGGCGCCTCCAATTGACCGTTCCATCCTTCCCACTGCTCCACGGGCTGCTCGG
GAACCCAATATCGACCGGAGCCGTCTTCCCAAATCGCCACCCTACACTGCTTTTCTAGGGAACCTACCCTATGATGTGAC
AGAAGAATCAATTAAGGAATTCTTTAGAGGATTAAATATCAGTGCAGTGCGTTTACCACGTGAACCCAGCAATCCAGAGA
GGTTGAAAGGTTTTGGTTATGCTGAATTTGAGGACCTGGATTCCCTGCTCAGTGCCCTGAGTCTCAATGAAGAGTCTCTA
GGTAACAGGAGAATTCGAGTGGACGTTGCTGATCAAGCACAGGATAAAGACAGGGATGATCGTTCTTTTGGCCGTGATAG
AAATCGGGATTCTGACAAAACAGATACAGACTGGAGGGCTCGTCCTGCTACAGACAGCTTTGATGACTACCCACCTAGAA
GAGGTGATGATAGCTTTGGAGACAAGTATCGAGATCGTTATGATTCAGACCGGTATCGGGATGGGTATCGGGATGGCCCA
CGCCGGGATATGGATCGATATGGTGGCCGGGATCGCTATGATGACCGAGGCAGCAGAGACTATGATAGAGGCTATGAATC
CCGGATAGGCAGTGGCAGAAGAGCATTTGGCAGTGGGTATCGCAGGGATGATGACTACAGAGGAGGCGGGGACCGCTATG
AAGACCGATACGACAGACGGGATGATCGGTCGTGGAGCTCCAGAGATGATTACTCTCGGGATGATTATAGGCGCGATGAC
AGAGGTCCCCCTCAAAGACCCAAACTGAATCTAAAGCCTCGGAGTACTCCTAAGGAAGATGATTCCTCTGCTAGTACCTC
CCAGTCCAGTCGAGCTGCTTCTATCTTTGGAGGGGCAAAGCCTGTTGACACAGCTGCTAGAGAAAGAGAAGTAGAAGAAC
GGCTACAGAAGGAACAAGAGAAGTTGCAGCGTCAGCTGGATGAGCCAAAACTAGAACGACGGCCTCGGGAGAGACACCCA
AGCTGGCGAAGTGAAGAAACTCAGGAACGGGAACGGTCGAGGACAGGAAGTGAGTCATCACAGACTGGGACCTCCGCCAC
ATCTGGCAGAAATGCACGAAGGAGAGAGAGTGAGAAGTCTCTAGAAAATGAAACACTCAATAAGGAGGAAGATTGTCACT
CTCCAACTTCTAAACCTCCCAAACCTGATCAGCCCCTAAAGGTAATGCCAGCCCCTCCACCAAAGGAGAATGCTTGGGTG
AAGCGAAGTTCTAACCCTCCAGCTCGATCTCAGAGCTCAGACACAGAGCAGCAATCCCCTACAAGTGGTGGGGGAAAAGT
AGCTCCAGCTCAACCATCTGAGGAAGGACCAGCAAGGAAAGATGAAAATAAAGTAGATGGGATGAATGTCCCAAAAGGCC
AAACTGGGACCTCTAGCCGTGGACCAGGAGACGGAGGGAACAAAGACCACTGGAAGGAGTCAGATAGGAAAGATGGCAAA
AAGGATCAAGACTCCAGATCTGCACCTGAGCCAAAGAAACCTGAGGAAAATCCAGCTTCGAAGTTCAGTTCTGCAAGCAA
GTATGCTGCTCTCTCTGTTGATGGTGAAGATGAAAACGAGGGAGAAGATTATGCCGAATAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 92 .18 RPM |
| SRP007412_brain | 42 .80 RPM |
| SRP007412_cerebellum | 45 .72 RPM |
| SRP007412_heart | 75 .55 RPM |
| SRP007412_kidney | 50 .47 RPM |
| SRP007412_liver | 43 .46 RPM |
| SRP007412_testis | 80 .06 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000012023 | possible_ortholog | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000007117 | possible_ortholog | 2 retrogenes | |
| Choloepus hoffmanni | ENSCHOG00000001608 | possible_ortholog | 2 retrogenes | |
| Callithrix jacchus | ENSCJAG00000018176 | ortholog_one2many | 2 retrogenes | |
| Cavia porcellus | ENSCPOG00000005595 | ortholog_many2many | 3 retrogenes | |
| Homo sapiens | ENSG00000063046 | possible_ortholog | 7 retrogenes | |
| Gorilla gorilla | ENSGGOG00000013695 | possible_ortholog | 5 retrogenes | |
| Loxodonta africana | ENSLAFG00000009534 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000012341 | ortholog_one2many | 2 retrogenes | |
| Macaca mulatta | ENSMMUG00000006205 | within_species_paralog | 2 retrogenes | |
| Mus musculus | ENSMUSG00000058655 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000017727 | possible_ortholog | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000025848 | possible_ortholog | 7 retrogenes | |
| Rattus norvegicus | ENSRNOG00000010103 | possible_ortholog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000006800 | ortholog_one2many | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000005423 | ortholog_one2many | 2 retrogenes | |
| Tarsius syrichta | ENSTSYG00000012880 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_mmul_731 | 94.03 | 98.51 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_mmul_783 | 95.06 | 66.83 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_mmul_1428 | 80.60 | 59.74 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_mmul_2384 | 83.33 | 68.98 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_mmul_2589 | 84.26 | 99.67 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSMMUG00000001062 retrocopies