Parental gene:

RBM3, ENSCAFG00000015485

Aliases:None
Description:RNA binding motif (RNP1, RRM) protein 3 [Source:HGNC Symbol;Acc:9900]
Organism:Dog (Canis familiaris)
Coordinates:X:41806838..41808876(+)


>ENSCAFG00000015485
ATGTCTTCTGAAGAAGGGAAGCTTTTCGTGGGAGGGCTGAACTTCAACACCGATGAGCAGGCTCTGGAAGACCACTTCAG
AAGCTTCGGTCCTATCTCTGAGGTGGTTGTTGTCAAGGACCGGGAGACTCAGCGATCCCGGGGTTTTGGTTTCATCACCT
TCACCGATCCAGAGCATGCCTCAGATGCCATGAGAGCCATGAATGGAGAGTCTCTGGATGGTCGCCAGATCCGTGTGGAT
CACGCGGGCAAGTCGGCCAGGGGAACTAGAGGGGGTGCCTTTGGGGCCCATGGGCGTGGTCGCAGCTACTCTAGAGGTGG
TGGGGACCAGGGCTATGGGAGTGGCAGATATGACAGTCGACCTGGAGGATATGGATATGGATATGGATATGGATATGGAT
ATGGAAGGTCCAGAGACTATGGTGGCAGAAGCCAGGGTGGTTATGACCGCTACTCAGGAGGAAATTACAGAGACAATTAT
GACAACTGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 26 .71 RPM
SRP017611_brain 10 .64 RPM
SRP017611_kidney 24 .30 RPM
SRP017611_liver 10 .88 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000013718 ortholog_one2many 1 retrogene
retro_acar_197,
Ailuropoda melanoleuca ENSAMEG00000012653 ortholog_one2one 1 retrogene
retro_amel_519,
Bos taurus ENSBTAG00000025848 ortholog_one2many 1 retrogene
retro_btau_1144,
Canis familiaris ENSCAFG00000013345 within_species_paralog 2 retrogenes
retro_cfam_1971, retro_cfam_966,
Canis familiaris ENSCAFG00000018962 within_species_paralog 4 retrogenes
retro_cfam_1106, retro_cfam_1244, retro_cfam_1649, retro_cfam_1914,
Cavia porcellus ENSCPOG00000003553 possible_ortholog 1 retrogene
retro_cpor_950,
Dasypus novemcinctus ENSDNOG00000010420 possible_ortholog 16 retrogenes
retro_dnov_1343, retro_dnov_1380, retro_dnov_1463, retro_dnov_151, retro_dnov_1718, retro_dnov_180, retro_dnov_2034, retro_dnov_2076, retro_dnov_212, retro_dnov_213, retro_dnov_2217, retro_dnov_2367, retro_dnov_2581, retro_dnov_733, retro_dnov_778, retro_dnov_974,
Dipodomys ordii ENSDORG00000000182 ortholog_one2one 1 retrogene
retro_dord_547,
Homo sapiens ENSG00000102317 ortholog_one2one 1 retrogene
retro_hsap_265,
Gadus morhua ENSGMOG00000012137 ortholog_many2many 1 retrogene
retro_gmor_4,
Loxodonta africana ENSLAFG00000007003 ortholog_one2many 1 retrogene
retro_lafr_1091,
Myotis lucifugus ENSMLUG00000003996 ortholog_one2one 1 retrogene
retro_mluc_1013,
Mus musculus ENSMUSG00000031167 ortholog_one2one 4 retrogenes
retro_mmus_2044, retro_mmus_2963, retro_mmus_3019, retro_mmus_501,
Nomascus leucogenys ENSNLEG00000007841 ortholog_one2one 2 retrogenes
retro_nleu_2591, retro_nleu_867,
Pongo abelii ENSPPYG00000020314 ortholog_one2one 1 retrogene
retro_pabe_40,
Pan troglodytes ENSPTRG00000021864 ortholog_one2one 1 retrogene
retro_ptro_222,
Ictidomys tridecemlineatus ENSSTOG00000027493 ortholog_one2many 1 retrogene
retro_itri_142,
Tarsius syrichta ENSTSYG00000008670 ortholog_one2one 4 retrogenes
retro_tsyr_1733, retro_tsyr_197, retro_tsyr_2002, retro_tsyr_679,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_259 79.05 90.74
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_cfam_1475 60.82 58.64
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSCAFG00000015485 retrocopies