Parental gene:

TMEM254, ENSCAFG00000015748

Aliases:None
Description:transmembrane protein 254 [Source:HGNC Symbol;Acc:25804]
Organism:Dog (Canis familiaris)
Coordinates:4:29317164..29323691(-)


>ENSCAFG00000015748
TCCGGCGGGGGCGCCGCAGGGATGGCGCCGGCGGCCGGCGGCGAGGCGCACTTCCAGAGGATGGTGCCGTTGAAGTCCGA
GGCCGGCAGGGCCGCTTCCGCCTACTTCCGTCCGGCCAGACGTTTGCCCGCCTTGGTCACCGTCCTGGCACTGGGCTACA
TGGCGTGGGTTGTCTTCTGGCCTCAGAGTGTCCCTTATCAGAGCCTCGGACCCTTGGGCCTCTTCACTCAGTACTTGGTG
GACCATCATCACACCCTCTTGCACAGCGGGTATTGGCTTGCCTGGCTGATTCACGTGGGAGAGTCCTTGTACGCCATTCT
GCTGGTTAGGTCTAAAGGCATCACGAATGGTCGGGCTCAACTACTCTGGTTCCTACAAACTTTCCTCTTTGGAATAGCAT
CTCTCTCCATCTTGATTGCTTACAGACCAAAACGCCAAAAACAAACTTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 24 .11 RPM
SRP017611_brain 12 .46 RPM
SRP017611_kidney 21 .92 RPM
SRP017611_liver 3 .19 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007670 ortholog_one2one 1 retrogene
retro_cjac_3839,
Dasypus novemcinctus ENSDNOG00000024625 ortholog_one2one 1 retrogene
retro_dnov_555,
Felis catus ENSFCAG00000026147 ortholog_one2one 1 retrogene
retro_fcat_401,
Myotis lucifugus ENSMLUG00000007585 ortholog_one2one 16 retrogenes
retro_mluc_1178, retro_mluc_2482, retro_mluc_2491, retro_mluc_2492, retro_mluc_2528, retro_mluc_2532, retro_mluc_2550, retro_mluc_2551, retro_mluc_2552, retro_mluc_2572, retro_mluc_2573, retro_mluc_2583, retro_mluc_2586, retro_mluc_2603, retro_mluc_2623, retro_mluc_766,
Macaca mulatta ENSMMUG00000003015 ortholog_one2one 1 retrogene
retro_mmul_1583,
Mus musculus ENSMUSG00000072676 ortholog_one2many 1 retrogene
retro_mmus_2102,
Oryctolagus cuniculus ENSOCUG00000013679 possible_ortholog 1 retrogene
retro_ocun_453,
Otolemur garnettii ENSOGAG00000028898 ortholog_one2one 1 retrogene
retro_ogar_59,
Tarsius syrichta ENSTSYG00000006920 ortholog_one2one 1 retrogene
retro_tsyr_103,
Tursiops truncatus ENSTTRG00000006122 ortholog_one2one 1 retrogene
retro_ttru_454,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_602 58.17 98.66
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2. retro_cfam_635 75.25 66.44
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3. retro_cfam_637 67.06 55.70
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Download FASTA sequences of all ENSCAFG00000015748 retrocopies