Parental gene:

NPM1, ENSCAFG00000016912

Aliases:None
Description:Canis lupus familiaris nucleophosmin (NPM1), mRNA. [Source:RefSeq mRNA;Acc:NM_001252171]
Organism:Dog (Canis familiaris)
Coordinates:4:40756781..40770088(-)


>ENSCAFG00000016912
ATGGAAGATTCGATGGACATGGACATGAGCCCCCTGCGGCCCCAGAACTATCTTTTTGGTTGTGAACTAAAGGCTGACAA
AGATTACCACTTTAAGGTGGATAATGATGAAAATGAGCACCAGTTATCTTTAAGAACGGTCAGTTTGGGAGCTGGTGCAA
AGGATGAATTGCACATTGTTGAAGCAGAGGCAATGAATTATGAAGGCAGTCCAATTAAAGTCACTCTGGCAACTTTGAAA
ATGTCTGTACAGCCAACGGTGTCCCTTGGGGGCTTTGAAATAACACCACCTGTGGTCTTACGGTTGAAGTGTGGTTCCGG
TCCTGTGCATATTAGTGGACAGCACTTAGTAGCTGTAGAGGAAGATGCAGAGTCAGAAGATGAAGAAGAGGAGGATGTGA
AACTTCTTAGTATATCTGGAAAGCGTTCTGCCCCTGGAAGTGGTAGCAAGGTTCCACAGAAAAAAGTAAAACTTGCTGCT
GATGAAGATGATGACGACGACGACGATGACGACGACGATGATGAAGATGATGATGATGATGATTTTGATGATGAGGAAGC
TGAAGAAAAGGCTCCAGTAAAGAAATCTATACGAGATACTCCAGCCAAAAATGCACAAAAATCAAACCAGAATGGAAAAG
ACTCAAAACCATCAACACCAAGAACAAAAGGTCAAGAATCTTTCAAAAAACAGGAAAAGACTCCCAAAACACCGAAAGGA
CCTAGTTCTGTAGAAGACATTAAAGCAAAAATGCAAGCAAGTATAGAAAAAGGTGGTTCTCTTCCCAAAGTGGAAGCCAA
GTTCATCAATTATGTGAAGAATTGCTTCCGGATGACTGACCAAGAGGCTATTCAAGATCTCTGGCAGTGGAGGAAGTCTC
TTTAA

Library Parental gene expression (RPM)
SRP012049_cerebellum 120 .75 RPM
SRP017611_brain 54 .86 RPM
SRP017611_kidney 282 .11 RPM
SRP017611_liver 43 .87 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003910 ortholog_many2many 1 retrogene
retro_amel_983,
Bos taurus ENSBTAG00000015316 ortholog_many2many 2 retrogenes
retro_btau_538, retro_btau_56,
Canis familiaris ENSCAFG00000009919 within_species_paralog 2 retrogenes
retro_cfam_1968, retro_cfam_2064,
Callithrix jacchus ENSCJAG00000019334 possible_ortholog 13 retrogenes
retro_cjac_1559, retro_cjac_1682, retro_cjac_1696, retro_cjac_1733, retro_cjac_2075, retro_cjac_2351, retro_cjac_2368, retro_cjac_2533, retro_cjac_2605, retro_cjac_3270, retro_cjac_3416, retro_cjac_4117, retro_cjac_838,
Equus caballus ENSECAG00000021950 ortholog_one2many 4 retrogenes
retro_ecab_1016, retro_ecab_1100, retro_ecab_393, retro_ecab_544,
Felis catus ENSFCAG00000030268 ortholog_many2many 3 retrogenes
retro_fcat_156, retro_fcat_376, retro_fcat_720,
Homo sapiens ENSG00000181163 ortholog_one2many 30 retrogenes
retro_hsap_1275, retro_hsap_129, retro_hsap_1526, retro_hsap_1580, retro_hsap_1593, retro_hsap_1621, retro_hsap_2226, retro_hsap_2375, retro_hsap_2478, retro_hsap_2856, retro_hsap_2862, retro_hsap_3355, retro_hsap_3460, retro_hsap_3609, retro_hsap_3636, retro_hsap_3718, retro_hsap_3776, retro_hsap_3808, retro_hsap_3817, retro_hsap_3822, retro_hsap_3962, retro_hsap_4666, retro_hsap_4753, retro_hsap_4785, retro_hsap_614, retro_hsap_638, retro_hsap_690, retro_hsap_717, retro_hsap_785, retro_hsap_961,
Gorilla gorilla ENSGGOG00000007220 possible_ortholog 12 retrogenes
retro_ggor_1543, retro_ggor_1660, retro_ggor_1976, retro_ggor_2453, retro_ggor_2454, retro_ggor_2539, retro_ggor_2559, retro_ggor_2571, retro_ggor_2681, retro_ggor_2959, retro_ggor_560, retro_ggor_591,
Macaca mulatta ENSMMUG00000015781 possible_ortholog 1 retrogene
retro_mmul_203,
Mus musculus ENSMUSG00000057113 possible_ortholog 5 retrogenes
retro_mmus_1301, retro_mmus_1798, retro_mmus_3131, retro_mmus_539, retro_mmus_550,
Otolemur garnettii ENSOGAG00000013616 possible_ortholog 14 retrogenes
retro_ogar_1554, retro_ogar_1623, retro_ogar_1671, retro_ogar_1776, retro_ogar_2015, retro_ogar_2168, retro_ogar_2207, retro_ogar_2461, retro_ogar_2605, retro_ogar_2832, retro_ogar_3037, retro_ogar_536, retro_ogar_595, retro_ogar_614,
Pongo abelii ENSPPYG00000016037 ortholog_many2many 7 retrogenes
retro_pabe_2405, retro_pabe_3072, retro_pabe_3261, retro_pabe_3627, retro_pabe_3699, retro_pabe_486, retro_pabe_532,
Pteropus vampyrus ENSPVAG00000002211 ortholog_one2many 1 retrogene
retro_pvam_851,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_22 93.29 50.68
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2. retro_cfam_286 86.96 54.08
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3. retro_cfam_900 99.34 51.70
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Download FASTA sequences of all ENSCAFG00000016912 retrocopies