Parental gene:

NPM1, ENSG00000181163

Aliases:NPM1, B23, NPM
Description:nucleophosmin (nucleolar phosphoprotein B23, numatrin) [Source:HGNC Symbol;Acc:7910]
Organism:Human (Homo sapiens)
Coordinates:5:170814119..170838141(+)


>ENSG00000181163
ATGGAAGATTCGATGGACATGGACATGAGCCCCCTGAGGCCCCAGAACTATCTTTTCGGTTGTGAACTAAAGGCCGACAA
AGATTATCACTTTAAGGTGGATAATGATGAAAATGAGCACCAGTTATCTTTAAGAACGGTCAGTTTAGGGGCTGGTGCAA
AGGATGAGTTGCACATTGTTGAAGCAGAGGCAATGAATTACGAAGGCAGTCCAATTAAAGTAACACTGGCAACTTTGAAA
ATGTCTGTACAGCCAACGGTTTCCCTTGGGGGCTTTGAAATAACACCACCAGTGGTCTTAAGGTTGAAGTGTGGTTCAGG
GCCAGTGCATATTAGTGGACAGCACTTAGTAGCTGTGGAGGAAGATGCAGAGTCAGAAGATGAAGAGGAGGAGGATGTGA
AACTCTTAAGTATATCTGGAAAGCGGTCTGCCCCTGGAGGTGGTAGCAAGGTTCCACAGAAAAAAGTAAAACTTGCTGCT
GATGAAGATGATGACGATGATGATGAAGAGGATGATGATGAAGATGATGATGATGATGATTTTGATGATGAGGAAGCTGA
AGAAAAAGCGCCAGTGAAGAAATCTATACGAGATACTCCAGCCAAAAATGCACAAAAGTCAAATCAGAATGGAAAAGACT
CAAAACCATCATCAACACCAAGATCAAAAGGACAAGAATCCTTCAAGAAACAGGAAAAAACTCCTAAAACACCAAAAGGA
CCTAGTTCTGTAGAAGACATTAAAGCAAAAATGCAAGCAAGTATAGAAAAAGGTGGTTCTCTTCCCAAAGTGGAAGCCAA
ATTCATCAATTATGTGAAGAATTGCTTCCGGATGACTGACCAAGAGGCTATTCAAGATCTCTGGCAGTGGAGGAAGTCTC
TTTAA

Library Parental gene expression (RPM)
bodymap2_adipose 332 .62 RPM
bodymap2_adrenal 422 .00 RPM
bodymap2_brain 165 .16 RPM
bodymap2_breast 239 .26 RPM
bodymap2_colon 676 .89 RPM
bodymap2_heart 159 .13 RPM
bodymap2_kidney 255 .78 RPM
bodymap2_liver 151 .05 RPM
bodymap2_lung 383 .42 RPM
bodymap2_lymph_node 324 .63 RPM
bodymap2_ovary 913 .07 RPM
bodymap2_prostate 560 .29 RPM
bodymap2_skeletal_muscle 231 .70 RPM
bodymap2_testis 446 .48 RPM
bodymap2_thyroid 478 .22 RPM
bodymap2_white_blood_cells 368 .83 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000003910 possible_ortholog 1 retrogene
retro_amel_983,
Bos taurus ENSBTAG00000015316 ortholog_one2many 2 retrogenes
retro_btau_538, retro_btau_56,
Canis familiaris ENSCAFG00000016912 ortholog_one2many 3 retrogenes
retro_cfam_22, retro_cfam_286, retro_cfam_900,
Callithrix jacchus ENSCJAG00000019334 possible_ortholog 13 retrogenes
retro_cjac_1559, retro_cjac_1682, retro_cjac_1696, retro_cjac_1733, retro_cjac_2075, retro_cjac_2351, retro_cjac_2368, retro_cjac_2533, retro_cjac_2605, retro_cjac_3270, retro_cjac_3416, retro_cjac_4117, retro_cjac_838,
Felis catus ENSFCAG00000030268 ortholog_one2many 3 retrogenes
retro_fcat_156, retro_fcat_376, retro_fcat_720,
Homo sapiens ENSG00000107833 within_species_paralog 1 retrogene
retro_hsap_792,
Gorilla gorilla ENSGGOG00000007220 possible_ortholog 12 retrogenes
retro_ggor_1543, retro_ggor_1660, retro_ggor_1976, retro_ggor_2453, retro_ggor_2454, retro_ggor_2539, retro_ggor_2559, retro_ggor_2571, retro_ggor_2681, retro_ggor_2959, retro_ggor_560, retro_ggor_591,
Macaca mulatta ENSMMUG00000015781 possible_ortholog 1 retrogene
retro_mmul_203,
Mus musculus ENSMUSG00000057113 possible_ortholog 5 retrogenes
retro_mmus_1301, retro_mmus_1798, retro_mmus_3131, retro_mmus_539, retro_mmus_550,
Otolemur garnettii ENSOGAG00000013616 possible_ortholog 14 retrogenes
retro_ogar_1554, retro_ogar_1623, retro_ogar_1671, retro_ogar_1776, retro_ogar_2015, retro_ogar_2168, retro_ogar_2207, retro_ogar_2461, retro_ogar_2605, retro_ogar_2832, retro_ogar_3037, retro_ogar_536, retro_ogar_595, retro_ogar_614,
Pongo abelii ENSPPYG00000016037 ortholog_one2one 7 retrogenes
retro_pabe_2405, retro_pabe_3072, retro_pabe_3261, retro_pabe_3627, retro_pabe_3699, retro_pabe_486, retro_pabe_532,
Pteropus vampyrus ENSPVAG00000002211 ortholog_one2one 1 retrogene
retro_pvam_851,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_129 96.23 54.08
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2. retro_hsap_614 89.38 60.00
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3. retro_hsap_638 85.53 53.40
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4. retro_hsap_690 90.85 57.36
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5. retro_hsap_717 89.31 59.25
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6. retro_hsap_785 88.34 61.78
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7. retro_hsap_961 91.30 54.42
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8. retro_hsap_1275 86.79 54.08
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9. retro_hsap_1526 91.36 54.08
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10. retro_hsap_1580 67.68 100.00
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11. retro_hsap_1593 85.80 54.42
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12. retro_hsap_1621 81.60 61.78
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13. retro_hsap_2226 85.00 54.08
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14. retro_hsap_2375 90.62 60.00
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15. retro_hsap_2478 77.59 59.18
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16. retro_hsap_2856 66.04 70.75
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17. retro_hsap_2862 80.49 62.93
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18. retro_hsap_3355 96.73 58.69
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19. retro_hsap_3460 63.09 86.42
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20. retro_hsap_3609 85.44 59.25
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21. retro_hsap_3636 83.12 61.39
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22. retro_hsap_3718 90.57 60.00
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23. retro_hsap_3776 84.91 61.39
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24. retro_hsap_3808 86.25 54.08
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25. retro_hsap_3817 71.05 57.92
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26. retro_hsap_3822 77.42 52.04
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27. retro_hsap_3962 94.34 54.08
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28. retro_hsap_4666 89.54 52.04
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29. retro_hsap_4753 86.34 60.38
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30. retro_hsap_4785 86.25 53.74
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Download FASTA sequences of all ENSG00000181163 retrocopies