Parental gene:

TSPAN3, ENSCAFG00000018068

Aliases:None
Description:tetraspanin 3 [Source:HGNC Symbol;Acc:17752]
Organism:Dog (Canis familiaris)
Coordinates:30:39248313..39263338(+)


>ENSCAFG00000018068
TTAACACTTAGCTTCACACTGCTTTTGATCATTCACATGATAGTAAGTTTTTGGAAAGGGGCAGCTGGCATTTTATGTTA
TGTGGGAGCCTATGTCTTTATCACTTACGATGACTATGACCACTTCTTTGAAGATGTGTATACTCTCATTCCTGCTGTAG
TGATCATAGCTGTAGGAGCCCTGCTTTTCATTATTGGCCTAATTGGCTGCTGTGCCACAATCCGGGAAAGCCGCTGTGGA
CTTGCCACGTTTGTCATCATCCTACTCTTGGTTTTTGTCACAGAAGTTGTTGTTGTGGTTTTGGGATACGTTTACAGAGC
AAAGGTGGAAAATGAGGTCGATCGCAGCATTCAGAAAGTGTATAAGACCTACAATGGAACGAACCCTGATGCTGCTAGCC
GGGCTATTGATTATGTACAGAGACAGCTGCATTGTTGTGGAATTCACAACTATTCAGACTGGGAAAATACAGACTGGTTC
AAAGAAACCAAAAACCAGAGTGTCCCTCTTAGCTGCTGCAGAGAGACCGCCAGCAGCTGTAATGGCAGCCTGGCCCACCC
CTCCAACCTCTATGCCGAGGGATGTGAGGCTCTAGTTGTAAAGAAGCTACAGGAAATCATGATGCATGTTATCTGGGCAG
CGCTGGCATTTGCAGCTATTCAGCTGCTGGGCATGTTATGTGCATGCATCGTACTGTGCAGAAGGAGTAGAGATCCTGCT
TATGAGCTCCTCATCACCGGTGGAACGTATGCATAG

Library Parental gene expression (RPM)
SRP012049_cerebellum 152 .04 RPM
SRP017611_brain 105 .51 RPM
SRP017611_kidney 124 .41 RPM
SRP017611_liver 23 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000009727 ortholog_one2one 1 retrogene
retro_amel_1275,
Bos taurus ENSBTAG00000002415 ortholog_one2one 2 retrogenes
retro_btau_1089, retro_btau_1650,
Canis familiaris ENSCAFG00000017521 within_species_paralog 3 retrogenes
retro_cfam_1600, retro_cfam_1609, retro_cfam_878,
Choloepus hoffmanni ENSCHOG00000003785 ortholog_one2one 2 retrogenes
retro_chof_162, retro_chof_1682,
Dasypus novemcinctus ENSDNOG00000005619 ortholog_one2one 3 retrogenes
retro_dnov_1371, retro_dnov_1520, retro_dnov_1616,
Echinops telfairi ENSETEG00000010916 ortholog_one2one 1 retrogene
retro_etel_872,
Felis catus ENSFCAG00000025746 ortholog_one2one 1 retrogene
retro_fcat_1860,
Mustela putorius furo ENSMPUG00000017332 ortholog_one2one 2 retrogenes
retro_mputfur_1641, retro_mputfur_1651,
Pteropus vampyrus ENSPVAG00000004662 ortholog_one2one 1 retrogene
retro_pvam_394,
Ictidomys tridecemlineatus ENSSTOG00000005615 ortholog_one2one 1 retrogene
retro_itri_1268,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_571 72.77 79.28
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2. retro_cfam_1391 95.32 93.63
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Download FASTA sequences of all ENSCAFG00000018068 retrocopies