Parental gene:

CALM3, ENSCAFG00000029151

Aliases:None
Description:calmodulin 3 (phosphorylase kinase, delta) [Source:HGNC Symbol;Acc:1449]
Organism:Dog (Canis familiaris)
Coordinates:1:109284672..109294917(-)


>ENSCAFG00000029151
ATGGCTGACCAGCTGACTGAGGAGCAGATTGCAGAGTTCAAGGAGGCCTTCTCCCTCTTTGACAAGGACGGAGATGGCAC
TATCACCACCAAGGAGTTGGGGACAGTGATGAGATCCCTGGGACAGAACCCCACTGAAGCAGAGCTCCAGGACATGATCA
ATGAGGTGGATGCAGATGGAAATGGGACCATTGACTTCCCGGAGTTCCTGACCATGATGGCCAGAAAGATGAAGGATACA
GACAGTGAGGAGGAGATCCGAGAGGCCTTCCGTGTCTTCGACAAGGATGGCAACGGCTACATCAGCGCTGCTGAACTGCG
TCATGTAATGACGAACCTGGGTGAGAAGCTGACCGATGAGGAGGTGGATGAGATGATCAGAGAGGCTGACATCGATGGAG
ACGGCCAGGTCAATTATGAAGAGTTTGTACAGATGATGACTGCCAAGTGA

Library Parental gene expression (RPM)
SRP012049_cerebellum 829 .94 RPM
SRP017611_brain 1546 .88 RPM
SRP017611_kidney 307 .27 RPM
SRP017611_liver 66 .71 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015712 possible_ortholog 1 retrogene
retro_acar_45,
Ailuropoda melanoleuca ENSAMEG00000008565 ortholog_one2one 3 retrogenes
retro_amel_1209, retro_amel_1562, retro_amel_421,
Bos taurus ENSBTAG00000014583 ortholog_one2one 2 retrogenes
retro_btau_113, retro_btau_135,
Cavia porcellus ENSCPOG00000001612 ortholog_one2one 1 retrogene
retro_cpor_1316,
Erinaceus europaeus ENSEEUG00000000140 ortholog_one2one 1 retrogene
retro_eeur_468,
Echinops telfairi ENSETEG00000009377 possible_ortholog 5 retrogenes
retro_etel_1062, retro_etel_1542, retro_etel_1812, retro_etel_587, retro_etel_854,
Felis catus ENSFCAG00000004995 ortholog_one2one 1 retrogene
retro_fcat_1726,
Homo sapiens ENSG00000160014 ortholog_one2one 3 retrogenes
retro_hsap_1255, retro_hsap_1785, retro_hsap_59,
Gorilla gorilla ENSGGOG00000000212 ortholog_one2one 4 retrogenes
retro_ggor_187, retro_ggor_2234, retro_ggor_522, retro_ggor_988,
Loxodonta africana ENSLAFG00000001155 ortholog_one2one 5 retrogenes
retro_lafr_100, retro_lafr_156, retro_lafr_631, retro_lafr_646, retro_lafr_86,
Microcebus murinus ENSMICG00000013180 ortholog_one2many 3 retrogenes
retro_mmur_1032, retro_mmur_1447, retro_mmur_501,
Myotis lucifugus ENSMLUG00000010528 ortholog_one2one 1 retrogene
retro_mluc_2477,
Monodelphis domestica ENSMODG00000009222 possible_ortholog 1 retrogene
retro_mdom_1126,
Mustela putorius furo ENSMPUG00000005261 ortholog_one2one 1 retrogene
retro_mputfur_404,
Mus musculus ENSMUSG00000019370 ortholog_one2one 3 retrogenes
retro_mmus_2879, retro_mmus_3448, retro_mmus_454,
Nomascus leucogenys ENSNLEG00000002752 ortholog_one2one 2 retrogenes
retro_nleu_1407, retro_nleu_3097,
Otolemur garnettii ENSOGAG00000014764 ortholog_one2one 2 retrogenes
retro_ogar_2085, retro_ogar_3311,
Procavia capensis ENSPCAG00000005751 ortholog_one2one 1 retrogene
retro_pcap_7,
Petromyzon marinus ENSPMAG00000003323 possible_ortholog 1 retrogene
retro_pmar_12,
Pongo abelii ENSPPYG00000010154 ortholog_one2one 4 retrogenes
retro_pabe_1106, retro_pabe_1466, retro_pabe_3238, retro_pabe_3676,
Pelodiscus sinensis ENSPSIG00000013173 possible_ortholog 1 retrogene
retro_psin_9,
Ictidomys tridecemlineatus ENSSTOG00000014352 ortholog_one2one 1 retrogene
retro_itri_1018,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cfam_68 98.66 100.00
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2. retro_cfam_121 55.70 100.00
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3. retro_cfam_164 95.80 95.97
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4. retro_cfam_225 97.32 100.00
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Download FASTA sequences of all ENSCAFG00000029151 retrocopies