Parental gene: | HDAC1, ENSCJAG00000000970 |
| Aliases: | None |
| Description: | histone deacetylase 1 [Source:HGNC Symbol;Acc:4852] |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 7:66524364..66569848(+) |
>ENSCJAG00000000970
ATGGCGCAGACGCAGGGCACCCGGAGGAAAGTCTGTTACTACTACGACGGGGATGTTGGAAATTACTATTATGGACAAGG
CCACCCAATGAAGCCTCACCGAATCCGCATGACTCATAATTTGCTGCTCAACTATGGTCTCTACCGAAAAATGGAAATCT
ATCGCCCTCACAAAGCCAATGCTGAGGAGATGACCAAGTACCACAGCGATGACTACATTAAATTCTTGCGCTCCATCCGT
CCAGATAACATGTCCGAGTACAGCAAGCAGATGCAGAGATTCAACGTTGGTGAGGACTGTCCAGTATTCGATGGCCTGTT
TGAGTTCTGTCAGTTGTCTACTGGTGGTTCTGTGGCAAGTGCTGTGAAACTTAATAAGCAGCAGACGGACATCGCTGTGA
ATTGGGCTGGGGGCCTGCACCATGCAAAGAAGTCCGAGGCATCTGGCTTCTGTTACGTCAATGATATTGTCTTGGCCATC
CTGGAACTGCTAAAGTATCACCAGAGGGTGCTGTATATTGACATTGATATTCACCATGGCGACGGTGTGGAAGAGGCCTT
CTATACTACAGACCGGGTCATGACTGTGTCCTTTCATAAGTATGGAGAGTACTTCCCAGGAACTGGGGACCTACGGGATA
TCGGGGCTGGCAAAGGCAAGTATTATGCTGTTAACTACCCGCTCCGAGATGGGATTGATGACGAGTCCTATGAGGCCATT
TTCAAGCCGGTCATGTCCAAAGTAATGGAGATGTTCCAGCCTAGTGCCGTGGTCTTACAGTGTGGCTCAGACTCCCTATC
TGGGGATCGGTTAGGTTGCTTCAATCTGACCATCAAAGGGCACGCCAAGTGTGTGGAATTTGTCAAGAGCTTTAACCTGC
CTATGCTGATGCTGGGAGGAGGTGGTTACACCATTCGTAATGTCGCCCGATGCTGGACGTACGAGACAGCTGTGGCCCTG
GATACGGAGATCCCTAATGAGCTTCCATACAACGACTACTTCGAATACTTTGGACCAGATTTCAAGCTCCACATCAGTCC
TTCCAATATGACTAACCAGAACACGAATGAGTACTTGGAGAAGATCAAACAGCGACTGTTTGAGAACCTGAGGATGCTGC
CGCATGCACCCGGGGTCCAAATGCAGGCGATTCCTGAGGACGCCATCCCTGAGGAGAGTGGTGATGAAGACGAAGAAGAC
CCTGACAAGCGCATCTCGATCTGCTCCTCTGACAAACGAATTGCCTGTGAGGAAGAGTTCTCAGACTCTGAAGAGGAGGG
AGAGGGGGGCCGCAAGAACTCTTCCAACTTCAAAAAAGCCAAGAGAGTCAAAACAGAGGATGAAAAAGAGAAAGAGCCAG
AGGAGAAGAAAGAAGTCACAGAAGAGGAGAAAACCAAGGAGGAGAAGCCAGAAGCCAAAGGGGTCAAAGAGGAGGTCAAG
TTGGCCTAA
ATGGCGCAGACGCAGGGCACCCGGAGGAAAGTCTGTTACTACTACGACGGGGATGTTGGAAATTACTATTATGGACAAGG
CCACCCAATGAAGCCTCACCGAATCCGCATGACTCATAATTTGCTGCTCAACTATGGTCTCTACCGAAAAATGGAAATCT
ATCGCCCTCACAAAGCCAATGCTGAGGAGATGACCAAGTACCACAGCGATGACTACATTAAATTCTTGCGCTCCATCCGT
CCAGATAACATGTCCGAGTACAGCAAGCAGATGCAGAGATTCAACGTTGGTGAGGACTGTCCAGTATTCGATGGCCTGTT
TGAGTTCTGTCAGTTGTCTACTGGTGGTTCTGTGGCAAGTGCTGTGAAACTTAATAAGCAGCAGACGGACATCGCTGTGA
ATTGGGCTGGGGGCCTGCACCATGCAAAGAAGTCCGAGGCATCTGGCTTCTGTTACGTCAATGATATTGTCTTGGCCATC
CTGGAACTGCTAAAGTATCACCAGAGGGTGCTGTATATTGACATTGATATTCACCATGGCGACGGTGTGGAAGAGGCCTT
CTATACTACAGACCGGGTCATGACTGTGTCCTTTCATAAGTATGGAGAGTACTTCCCAGGAACTGGGGACCTACGGGATA
TCGGGGCTGGCAAAGGCAAGTATTATGCTGTTAACTACCCGCTCCGAGATGGGATTGATGACGAGTCCTATGAGGCCATT
TTCAAGCCGGTCATGTCCAAAGTAATGGAGATGTTCCAGCCTAGTGCCGTGGTCTTACAGTGTGGCTCAGACTCCCTATC
TGGGGATCGGTTAGGTTGCTTCAATCTGACCATCAAAGGGCACGCCAAGTGTGTGGAATTTGTCAAGAGCTTTAACCTGC
CTATGCTGATGCTGGGAGGAGGTGGTTACACCATTCGTAATGTCGCCCGATGCTGGACGTACGAGACAGCTGTGGCCCTG
GATACGGAGATCCCTAATGAGCTTCCATACAACGACTACTTCGAATACTTTGGACCAGATTTCAAGCTCCACATCAGTCC
TTCCAATATGACTAACCAGAACACGAATGAGTACTTGGAGAAGATCAAACAGCGACTGTTTGAGAACCTGAGGATGCTGC
CGCATGCACCCGGGGTCCAAATGCAGGCGATTCCTGAGGACGCCATCCCTGAGGAGAGTGGTGATGAAGACGAAGAAGAC
CCTGACAAGCGCATCTCGATCTGCTCCTCTGACAAACGAATTGCCTGTGAGGAAGAGTTCTCAGACTCTGAAGAGGAGGG
AGAGGGGGGCCGCAAGAACTCTTCCAACTTCAAAAAAGCCAAGAGAGTCAAAACAGAGGATGAAAAAGAGAAAGAGCCAG
AGGAGAAGAAAGAAGTCACAGAAGAGGAGAAAACCAAGGAGGAGAAGCCAGAAGCCAAAGGGGTCAAAGAGGAGGTCAAG
TTGGCCTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 27 .08 RPM |
| SRP051959_skeletal_muscle | 6 .31 RPM |
| SRP051959_lymph_node | 39 .47 RPM |
| SRP051959_lung | 25 .56 RPM |
| SRP051959_liver | 11 .91 RPM |
| SRP051959_kidney | 22 .72 RPM |
| SRP051959_heart | 12 .61 RPM |
| SRP051959_colon | 31 .55 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ciona intestinalis | ENSCING00000002649 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000116478 | ortholog_one2one | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000011741 | ortholog_one2one | 1 retrogene | |
| Myotis lucifugus | ENSMLUG00000013837 | ortholog_one2many | 1 retrogene | |
| Macaca mulatta | ENSMMUG00000009948 | ortholog_one2one | 2 retrogenes | |
| Mus musculus | ENSMUSG00000028800 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000002473 | ortholog_one2one | 1 retrogene | |
| Pelodiscus sinensis | ENSPSIG00000004134 | ortholog_one2one | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000013325 | ortholog_one2one | 1 retrogene | |
| Rattus norvegicus | ENSRNOG00000009568 | possible_ortholog | 3 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000008787 | possible_ortholog | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_830 | 70.29 | 98.34 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cjac_2490 | 95.24 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000000970 retrocopies