Parental gene:

HDAC1, ENSPSIG00000004134

Aliases:None
Description:histone deacetylase 1 [Source:HGNC Symbol;Acc:4852]
Organism:Chinese softshell turtle (Pelodiscus sinensis)
Coordinates:JH207279.1:881277..909200(+)


>ENSPSIG00000004134
ATGGCGCTGACACAGGGGACCAAGCGGAAAGTCTGTTACTACTATGACGGGGATGTTGGAAACTACTATTATGGCCAGGG
TCATCCAATGAAACCCCATAGGATCCGAATGACCCACAACCTCCTGCAAATGGAGATATATCGCCCCCACAAGGCAAATG
CAGAAGAAATGACCAAGTATCATAGTGATGACTACATTAAATTTCTGAGATCTATTCGCCCTGATAACATGTCTGAGTAC
AGCAAGCAGATGCAGAGATTCAATGTTGGGGAAGATTGCCCAGTGTTTGATGGGCTGTTTGAGTTTTGTCAGCTGTCTGC
AGGAGGTTCTGTTGCCAGCGCTGTGAAGCTGAACAAGCAACAGACAGATATTGCTGTGAATTGGGCAGGAGGCCTTCACC
ACGCTAAGAAATCGGAGGCTTCTGGCTTCTGTTACGTCAACGACATTGTCTTGGCCATCTTGGAGCTCCTAAAGTACCAC
CAGAGGGTGCTGTATATTGACATTGATATCCATCATGGCGATGGCGTGGAGGAAGCCTTTTACACCACAGACCGTGTCAT
GACTGCGTCCTTTCATAAGTATGGAGAATACTTCCCAGGAACAGGGGATCTGCGGGATATTGGTGCAGGTAAAGGCAAGT
ATTATGCTGTCAACTATCCTCTCCGGGACGGAATTGACGATGAGTCCTACGAGGCAATATTTAAGCCGGTCATATCTAAA
GTGATGGAGACGTTCCAGCCCAGTGCAGTTGCCTTGCAGTGTGGATCAGATTCCCTGTCGGGGGACAGGCTGGGGTGTTT
CAATCTCACCATCAAAGGTCATGCCAAGTGTGTGGAGTTCGTAAAGAGTTTCAACTTGCCCATGCTGATGCTAGGAGGGG
GTGGCTACACAATCCGCAACGTGGCTAGATGCTGGACTTACGAGACTGCTGTGGCTTTGGACACAGAAATTCCAAATGAG
CTTCCATATAATGACTATTTTGAATACTTTGGACCCGACTTTAAGCTCCACATCAGCCCTTCGAACATGACCAACCAGAA
CACCAATGAGTATCTTGAGAAGATTAAGCAACGGCTGTTTGAGAATCTGCGCATGCTCCCTCATGCCCCTGGTGTCCAGA
TGCAGCCGATTCCTGAGGACGCTGTGCAGGAGGACAGTGGAGATGAAGATGAAGAGGACCCTGACAAACGCATTTCAATG
CGCTCTGCTGACAAGAGAATAGCCTGTGATGAAGAATTTTCGGATTCTGAAGATGAAGGGGAAGGTGGTCGCAAAAATGT
TGCCAATTTTAAGAAGGCAAAGCGTGTGAAAACGGAAGAGGAGAAGGAGGAGGAGGAGAAGGAGAAGAAAGATGAGAAAG
AAGAGGAAAAAGCCAAAGAGGAGAAAGCAGAACCCAAAGGGGTAAAGGAAGAGACTAAATCGGCCTAA

Species Parental gene accession Homology type Retrogenes number
Ciona intestinalis ENSCING00000002649 ortholog_one2many 1 retrogene
retro_cint_18,
Callithrix jacchus ENSCJAG00000000970 ortholog_one2one 2 retrogenes
retro_cjac_2490, retro_cjac_830,
Homo sapiens ENSG00000116478 ortholog_one2one 1 retrogene
retro_hsap_826,
Gorilla gorilla ENSGGOG00000011741 ortholog_one2one 1 retrogene
retro_ggor_676,
Myotis lucifugus ENSMLUG00000013837 ortholog_one2many 1 retrogene
retro_mluc_283,
Macaca mulatta ENSMMUG00000009948 ortholog_one2many 2 retrogenes
retro_mmul_1085, retro_mmul_2518,
Mus musculus ENSMUSG00000028800 ortholog_one2many 1 retrogene
retro_mmus_153,
Nomascus leucogenys ENSNLEG00000002473 ortholog_one2one 1 retrogene
retro_nleu_259,
Otolemur garnettii ENSOGAG00000005709 ortholog_one2one 3 retrogenes
retro_ogar_2181, retro_ogar_3022, retro_ogar_3313,
Pteropus vampyrus ENSPVAG00000013325 ortholog_one2one 1 retrogene
retro_pvam_1339,
Rattus norvegicus ENSRNOG00000009568 ortholog_one2many 3 retrogenes
retro_rnor_1091, retro_rnor_1098, retro_rnor_2457,
Sarcophilus harrisii ENSSHAG00000008787 ortholog_one2many 1 retrogene
retro_shar_573,
Tursiops truncatus ENSTTRG00000001613 ortholog_one2one 1 retrogene
retro_ttru_1236,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_psin_44 80.82 50.11
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Download FASTA sequences of all ENSPSIG00000004134 retrocopies