Parental gene:

MMU.10126, ENSMMUG00000009948

Aliases:None
Description:Histone deacetylase [Source:UniProtKB/TrEMBL;Acc:F6RIU8]
Organism:Rhesus macaque (Macaca mulatta)
Coordinates:1:35079418..35098893(+)


>ENSMMUG00000009948
CGCCCTCACAAAGCCAATGCTGAGGAGATGACCAAGTACCATAGTGACGACTACATTAAATTCTTGCGCTCCATCCGTCC
AGATAACATGTCGGAGTACAGCAAGCAGATGCAGAGATTCAACGTTGGTGAGGACTGTCCAGTATTCGACGGCCTCTTTG
AGTTCTGTCAGTTGTCTACTGGTGGTTCTGTGGCAAGTGCTGTGAAACTTAATAAGCAGCAGACGGACATCGCTGTGAAT
TGGGCTGGGGGCCTGCACCATGCAAAGAAGTCTGAGGCATCTGGCTTCTGTTACGTCAATGATATCGTCTTGGCCATCCT
GGAACTGCTAAAGTATCACCAGAGGGTGCTGTATATTGACATTGATATTCACCATGGCGACGGCGTGGAAGAGGCCTTCT
ATACCACAGACCGGGTCATGACTGTGTCCTTTCATAAGTATGGAGAGTACTTCCCAGGAACTGGGGACCTGCGGGATATC
GGGGCTGGAAAAGGCAAGTATTATGCTGTTAACTACCCGCTCCGAGACGGGATTGATGACGAGTCCTATGAGGCCATTTT
CAAGCCGGTCATGTCCAAAGTAATGGAGATGTTCCAACCTAGCGCGGTGGTCTTACAGTGTGGCTCAGACTCCCTGTCTG
GGGATCGGTTAGGTTGCTTCAATCTAACCATCAAAGGGCACGCCAAGTGTGTGGAATTTGTCAAGAGCTTTAACCTGCCT
ATGCTGATGCTGGGAGGTGGTGGTTACACCATTCGTAATGTTGCCCGGTGCTGGACATACGAGACAGCTGTGGCCCTGGA
TACGGAGATCCCTAATGAGCTTCCATACAACGACTACTTTGAATACTTTGGACCGGATTTCAAGCTCCACATCAGTCCTT
CCAATATGACTAACCAGAACACGAATGAGTACCTGGAGAAGATCAAACAGCGGCTGTTTGAGAACCTTAGAATGCTGCCG
CATGCACCTGGGGTCCAAATGCAGGCGATTCCTGAGGACGCCATCCCTGAGGAGAGTGGCGATGAGGACGAAGAAGACCC
TGACAAGCGCATCTCGATCTGCTCCTCCGACAAACGAATTGCCTGTGAGGAAGAGTTCTCCGATTCTGAAGAGGAGGGAG
AGGGGGGCCGCAAGAACTCTTCCAACTTCAAAAAAGCCAAGAGAGTCAAAACAGAGGATGAAAAAGAGAAAGACCCAGAG
GAGAAGAAAGAAGTCACAGAAGAGGAGAAAACCAAGGAGGAAAAGCCAGAAGCCAAAGGGGTCAAGGAGGAGGTCAAGTT
GGCCTGA

Library Parental gene expression (RPM)
SRP007412_brain 7 .62 RPM
SRP007412_brain_prefrontal_cortex 7 .54 RPM
SRP007412_cerebellum 5 .10 RPM
SRP007412_heart 12 .37 RPM
SRP007412_kidney 34 .86 RPM
SRP007412_liver 24 .34 RPM
SRP007412_testis 83 .64 RPM



Species Parental gene accession Homology type Retrogenes number
Ciona intestinalis ENSCING00000002649 ortholog_one2many 1 retrogene
retro_cint_18,
Callithrix jacchus ENSCJAG00000000970 ortholog_one2one 2 retrogenes
retro_cjac_2490, retro_cjac_830,
Homo sapiens ENSG00000116478 ortholog_one2one 1 retrogene
retro_hsap_826,
Gorilla gorilla ENSGGOG00000011741 ortholog_one2one 1 retrogene
retro_ggor_676,
Myotis lucifugus ENSMLUG00000013837 ortholog_one2many 1 retrogene
retro_mluc_283,
Macaca mulatta ENSMMUG00000012588 within_species_paralog 1 retrogene
retro_mmul_49,
Mus musculus ENSMUSG00000028800 possible_ortholog 1 retrogene
retro_mmus_153,
Nomascus leucogenys ENSNLEG00000002473 ortholog_one2one 1 retrogene
retro_nleu_259,
Otolemur garnettii ENSOGAG00000005709 possible_ortholog 3 retrogenes
retro_ogar_2181, retro_ogar_3022, retro_ogar_3313,
Pelodiscus sinensis ENSPSIG00000004134 ortholog_one2many 1 retrogene
retro_psin_44,
Pteropus vampyrus ENSPVAG00000013325 ortholog_one2one 1 retrogene
retro_pvam_1339,
Rattus norvegicus ENSRNOG00000009568 possible_ortholog 3 retrogenes
retro_rnor_1091, retro_rnor_1098, retro_rnor_2457,
Sarcophilus harrisii ENSSHAG00000008787 possible_ortholog 1 retrogene
retro_shar_573,
Tursiops truncatus ENSTTRG00000001613 possible_ortholog 1 retrogene
retro_ttru_1236,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmul_1085 68.76 99.77
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2. retro_mmul_2518 89.74 100.00
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Download FASTA sequences of all ENSMMUG00000009948 retrocopies