Parental gene:

LETM1, ENSCJAG00000001859

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:189053460..189093581(+)


>ENSCJAG00000001859
ATGGCGTCCATCTTACTGAGGAGCTGCCGCGGCCGGGCGCCCGCCCGCCTCCGGCCGTCGCCTCTAGCCACCGCCCCGCG
GGGTAGTCCGGGGGATCCTGCACGTCTCAGCTGTACCAGCACCCTGGGGTCGAGGAGCTGCCTGAGTGTTCCGTTGGGCT
GCTGTGCTCCCATCCACCCCGTGTACCCATCCTTCAGAGGCGATCCCCTTGGCTGTTGGACTCTGAGGCCCGAATGCCTT
CGCGCAGTGTCGAGAGCGCCATGGACCTCCACATCTGTGGGTTTTGTGTTTGTGGGACCTCAGTGCCTTCCTGTGCGCGG
CTGGCACTCTTCGCGTCCTGTCCGCGATGACTCGGTAGTGGAGAAGTCCCTCAAGTCCTTGAAGGACAAGAACAAGAAGC
TGGAGGAAGGCGGCCCTGTGTACAGCCCCCCCGCAGAGGTGGTGGTGAAGAAGTCCCTCGGGCAGAGGGTGCTGGACGAG
CTGAAGCACTACTACCATGGCTTCCGCCTGCTGTGGATCGACACCAAGATCGCGGCACGCATGCTCTGGCGCATCCTCAA
CGGCCACACCCTGACCCGCCGGGAACGCAGGCAGTTTCTCCGGATCTGCGCTGACCTCTTCCGCCTGGTGCCGTTCCTTG
TGTTTGTGGTGGTGCCCTTCATGGAGTTCCTGCTGCCTGTGGCTGTGAAGCTCTTCCCCAACATGTTGCCCTCCACATTT
GAGACCCAGTCCATAAAGGAGGAGAGGCTGAAGAAGGAGCTTCGGGTCAAGCTGGAGTTGGCCAAGTTCCTGCAGGACAC
CATCGAGGAGATGGCCTTGAAGAACAAGGCAGCCAAGGGCAGTGCCACCAAGGACTTCTCCGTGTTTTTCCAGAAGATCC
GGGAGACAGGGGAGAGGCCCAGCAACGAGGAGATCATGCGTTTTTCCAAGTTGTTTGAGGACGAGCTGACCCTGGACAAC
CTGACGCGGCCGCAGCTGGTGGCGCTGTGCAAGCTGCTGGAGCTGCAGTCCATCGGCACCAACAACTTCCTGCGCTTCCA
ACTCACCATGCGGCTGCGCTCCATCAAGGCCGACGACAAGCTGATTGCTGAGGAAGGGGTGGACAGCCTGAATGTCAAGG
AGCTGCAGGCGGCGTGTCGGGCACGAGGCATGCGGGCCCTGGGCGTCACGGAAGACCGCCTGCGGGGCCAGCTGAAGCAG
TGGCTGGACCTGCATCTGCACCAGGAGATCCCCACATCTCTGCTTATCCTGTCCCGGGCCCTGTACCTCCCGGACACCCT
GTCGCCGGCCGACCAGCTCAAGTCCACACTGCAGACCCTTCCGGAGATTGTGGCAAAGGAAGCGCAGGTGAAAGCAGCCG
AAGTGGAGGGCGAGCAGGTGGACAACAAGGCCAAGCTGGAGGCCACCCTGCAGGAGGAGGCAGCCATCCAGCAGGAGCAC
CTTGAGAAGGAGCTGCAGAGGCGCTCGGAGGCAGCGAAGGATCTTGAGCTTGAAAGTGTGGAAGCCGCTCCCCGAAGGGC
AGGGGCTGAGCCACAGCCAGAAGTGCCTGACACAGTCCTGCAGTCAGAGACCCTGAAGGACACGGCCCCCGTGCTGGAGG
GCTTAAAGGAGGAGGAGATAACCAAGGAGGAGATTGACATCCTCAGTGACGCCTGCTCTAAGCTGCAGGAGCAGAAGAAG
TCGCTCACCAAGGAGAAGGAGGAGCTGGAGCTGCTGAAGGAGGACGTGCAGGACTACAGCCAGGACTTGCAAGAGATCAA
GAAGGAACTTTCAAAGACTGGTGAAGAGCAGTATGTGGAAGAATCTAAAGCCAGCAAGAGACTGACGAAAAGGGTACAGC
AGATGATTGGACAGATCGACGGCTTGATCTCGCAGCTGGAGATGGACCAGCAGGCCGGCAAGCTGGCCCCAGCCGAGGGC
GTGCCCACAGGGGAGAACGTCATCAGTGTCGCTGAGCTCATCAGCGCCATGAAGCAAGTGAAGCACATTCCCGAAAGCAA
GCTCACCAGCCTGGCCGCAGCACTGGACGAGAACAAGGACGGCAGGGTCAACATCGATGACCTCGTCAAGGTGATTGAGC
TTGTGGACAAAGAAGATGTTCACGTCTCCACCAGCCAGGTGGCTGAGATTGTAGCAACACTGGAGAAGGAGGAGAAGGTG
GAGGAGAAGGAGAAGGCCAAGGAGAAGGCGGAAAAGGCGGAGAAGGAGGTCGCAGAGGTGAAGAGCTAG

Library Parental gene expression (RPM)
SRP051959_spleen 7 .52 RPM
SRP051959_skeletal_muscle 12 .05 RPM
SRP051959_lymph_node 6 .99 RPM
SRP051959_lung 6 .75 RPM
SRP051959_liver 8 .66 RPM
SRP051959_kidney 13 .51 RPM
SRP051959_heart 9 .10 RPM
SRP051959_colon 12 .07 RPM



Species Parental gene accession Homology type Retrogenes number
Homo sapiens ENSG00000168924 ortholog_one2one 1 retrogene
retro_hsap_2019,
Gorilla gorilla ENSGGOG00000002923 ortholog_one2one 2 retrogenes
retro_ggor_1158, retro_ggor_1159,
Nomascus leucogenys ENSNLEG00000000067 ortholog_one2one 2 retrogenes
retro_nleu_1752, retro_nleu_2731,
Otolemur garnettii ENSOGAG00000014883 ortholog_one2one 1 retrogene
retro_ogar_20,
Pongo abelii ENSPPYG00000014533 ortholog_one2one 1 retrogene
retro_pabe_1655,
Ictidomys tridecemlineatus ENSSTOG00000014167 ortholog_one2one 1 retrogene
retro_itri_160,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1529 64.56 79.07
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Download FASTA sequences of all ENSCJAG00000001859 retrocopies