Parental gene:

EIF3J, ENSCJAG00000002412

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:10:21710926..21739332(+)


>ENSCJAG00000002412
CTCCCGGCCCCTGCCGCCGCTAATGGGGGGGACTCCGACTCCTGGGACGCGGACGCATTCTCCGTGGAAGACCCAGTGCG
GAAGGTTGGGGGCGGCGGCACTGCCGGCGGGGACCGCTGGGAAGGCGAGGACGAAGACGAGGACGTCAAGGATAACTGGG
ATGATGATGATGATGAAAAAAAAGAGGAAGCAGAAGTAAAACCAGGCTTTTCTATTTCAGAACACATTTACATGGTTCAA
AAATTAAAACGTGATGAAAGGGTTTTTAAAAAGGCTATAGAAGCAACCCCAGTGAAGTTAGAAGAACCTGAAGAGCCAAA
AGTGCTAACACCAGAAGAACAATTAGCAGATAAACTTCGGCTAAAGAAATTACAGGAAGAGTCAGACCTTGAATTAGCAA
AGGAAACTTTTGGTGTTAATAATACAGTTTTTGGAATAGATGCTATGAACCCATCTTCAAGAGATGACTTTACAGAGTTT
GGAAAGTTACTAAAAGATAAAATTACACAATATGAAAAGTCACTATATTATGCCAGCTTTTTGGAAGTCTTAGTTCGAGA
TGTGTGTATTTCATTGGAAATTGATGACTTGAAAAAGATTACCAATTCACTGACTGTGCTTTGCAGTGAAAAACAGAAGC
AAGAAAAGCAAAGCAAAGCCAAAAAGAAGAAGAAAGGTGTGGTTCCTGGAGGGGGATTAAAAGCCACCATGAAAGATGAT
CTGGCAGATTATGGTGGTTATGATGGAGGATATGTACAAGATTATGAAGACTTCATGTGA

Library Parental gene expression (RPM)
SRP051959_colon 16 .97 RPM
SRP051959_heart 22 .96 RPM
SRP051959_kidney 21 .85 RPM
SRP051959_liver 23 .22 RPM
SRP051959_lung 22 .66 RPM
SRP051959_lymph_node 24 .02 RPM
SRP051959_skeletal_muscle 37 .52 RPM
SRP051959_spleen 23 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Cavia porcellus ENSCPOG00000012396 ortholog_one2one 3 retrogenes
retro_cpor_1357, retro_cpor_1358, retro_cpor_500,
Dipodomys ordii ENSDORG00000008339 possible_ortholog 7 retrogenes
retro_dord_208, retro_dord_364, retro_dord_451, retro_dord_470, retro_dord_633, retro_dord_738, retro_dord_746,
Equus caballus ENSECAG00000008716 possible_ortholog 1 retrogene
retro_ecab_635,
Echinops telfairi ENSETEG00000005052 possible_ortholog 1 retrogene
retro_etel_1376,
Homo sapiens ENSG00000104131 possible_ortholog 1 retrogene
retro_hsap_4189,
Gorilla gorilla ENSGGOG00000000548 possible_ortholog 2 retrogenes
retro_ggor_1687, retro_ggor_41,
Macropus eugenii ENSMEUG00000010372 ortholog_one2many 1 retrogene
retro_meug_256,
Microcebus murinus ENSMICG00000005006 possible_ortholog 1 retrogene
retro_mmur_100,
Monodelphis domestica ENSMODG00000017696 possible_ortholog 1 retrogene
retro_mdom_141,
Mus musculus ENSMUSG00000027236 possible_ortholog 1 retrogene
retro_mmus_18,
Nomascus leucogenys ENSNLEG00000005568 possible_ortholog 1 retrogene
retro_nleu_2848,
Oryctolagus cuniculus ENSOCUG00000005376 ortholog_one2one 1 retrogene
retro_ocun_1350,
Otolemur garnettii ENSOGAG00000004694 possible_ortholog 1 retrogene
retro_ogar_1227,
Pongo abelii ENSPPYG00000006431 possible_ortholog 1 retrogene
retro_pabe_3429,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_589 53.47 54.44
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Download FASTA sequences of all ENSCJAG00000002412 retrocopies