Parental gene:

Eif3j1, ENSMUSG00000027236

Aliases:None
Description:eukaryotic translation initiation factor 3, subunit J1 [Source:MGI Symbol;Acc:MGI:1925905]
Organism:Mouse (Mus musculus)
Coordinates:2:122028545..122056598(+)


>ENSMUSG00000027236
ATGGCGGCGGCGGCGGCGGCGGCAGCGGCGGCGGGGGACTCAGACTCTTGGGACGCGGACACGTTCTCTATGGAGGACCC
GGTGCGGAAGGTCGCGGGCGGCGGCACGGCCGGCGGGGACCGCTGGGAAGGCGAGGACGAGGACGAGGACGTGAAGGATA
ACTGGGATGATGATGATGATGAAAATAAAGAGGAAGCAGAAGTCAAACCAGAAGTAAAAATTTCAGAGAAGAAAAAAATA
GCAGAAAAGATAAAAGAGAAAGAACGGCAGCAGAAGAAAAGGCAAGAAGAAATTAAAAAGAGGTTAGAAGAACCTGAAGA
ATCTAAAGTACTAACACCTGAAGAGCAATTAGCAGATAAACTCCGGCTAAAGAAATTACAGGAAGAGTCAGACCTTGAAT
TAGCAAAAGAAACTTTTGGTGTTAATAATACCGTTTATGGAATAGATGCTATGAACCCATCTTCAAGAGATGACTTCACA
GAGTTTGGAAAGTTACTAAAAGATAAAATTACACAATATGAAAAATCACTATATTATGCCAGTTTTTTGGAAGCCTTAGT
TCGGGATGTCTGTATTTCATTGGAAATTGATGACTTGAAAAAGATTACCAACTCATTGACTGTGCTCTGCAGTGAAAAAC
AGAAGCAAGAAAAGCAAAGCAAAGCCAAAAAGAAGAAGAAAGGCGTGGTTCCTGGAGGGGGATTAAAGGCCACCATGAAA
GACGACCTGGCAGATTATGGTGGATATGAAGGAGGCTATGTACAAGACTATGAAGACTTCATGTGA

Library Parental gene expression (RPM)
SRP007412_brain 10 .54 RPM
SRP007412_cerebellum 7 .43 RPM
SRP007412_heart 15 .94 RPM
SRP007412_kidney 10 .01 RPM
SRP007412_liver 14 .12 RPM
SRP007412_testis 16 .10 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000002412 possible_ortholog 1 retrogene
retro_cjac_589,
Cavia porcellus ENSCPOG00000012396 possible_ortholog 3 retrogenes
retro_cpor_1357, retro_cpor_1358, retro_cpor_500,
Dipodomys ordii ENSDORG00000008339 ortholog_one2many 7 retrogenes
retro_dord_208, retro_dord_364, retro_dord_451, retro_dord_470, retro_dord_633, retro_dord_738, retro_dord_746,
Equus caballus ENSECAG00000008716 possible_ortholog 1 retrogene
retro_ecab_635,
Echinops telfairi ENSETEG00000005052 possible_ortholog 1 retrogene
retro_etel_1376,
Homo sapiens ENSG00000104131 possible_ortholog 1 retrogene
retro_hsap_4189,
Gorilla gorilla ENSGGOG00000000548 possible_ortholog 2 retrogenes
retro_ggor_1687, retro_ggor_41,
Macropus eugenii ENSMEUG00000010372 ortholog_one2many 1 retrogene
retro_meug_256,
Microcebus murinus ENSMICG00000005006 possible_ortholog 1 retrogene
retro_mmur_100,
Monodelphis domestica ENSMODG00000017696 possible_ortholog 1 retrogene
retro_mdom_141,
Nomascus leucogenys ENSNLEG00000005568 possible_ortholog 1 retrogene
retro_nleu_2848,
Oryctolagus cuniculus ENSOCUG00000005376 possible_ortholog 1 retrogene
retro_ocun_1350,
Otolemur garnettii ENSOGAG00000004694 possible_ortholog 1 retrogene
retro_ogar_1227,
Pongo abelii ENSPPYG00000006431 ortholog_one2many 1 retrogene
retro_pabe_3429,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_mmus_18 100.00 99.62
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Download FASTA sequences of all ENSMUSG00000027236 retrocopies