Parental gene: | ENSCJAG00000002901 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 6:123672183..123718879(+) |
>ENSCJAG00000002901
ATGGGGAACACGCTGACCTGTTGCGTGTCCCCCAATGCCAGCCCCAAGCTGGGCCGGCGCGCGGGGTCGGCGGAGCTGTA
CTGCGCTTCCGACATCTACGAGGCGGCGTCGGGAGACGCGGTGGCGGTAGCGCCCGCTGCTGTGGAGCCTGCTGAGTTGG
ATTTTGGAGAGGGCGAGGGCCACCACCTGCAGCACATCAGCGACCGCGAGATGCCCGAAGATTTAGCTTTGGAGTCAAAC
CCTTCTGACCATCCAAGGGCAAGCACAATTTTCCTGAGCAAATCTCAAACAGATGTGCGAGAAAAGAGGAAGAGCAACCA
TTTAAACCATGTATCTCCAGGGCAGCTTACTAAAAAGTATAGCTCATGCTCAACAATATTTCTAGATGACAGCACAGTCA
GCCAGCCTAATCTTAGAACCACAGTAAAATGTGTGACCTTAGCAATATATTACCACATAAAGAACAGAGATGCAAATAGA
TCCCTGGATATTTTTGATGAGAGATCACATCCACTTACACGAGAAAAAGTTCCAGAGGAATACTTTAAGCATGATCCTGA
GCACAAATTTATTTACAGATTTGTTCGTACTCTTTTTAGTGCTGCACAGCTAACAGCTGAATGTGCAATAGTAACTTTGG
TTTATTTAGAAAGGCTCTTAACTTATGCTGAAATCGACATCTGTCCCACTAATTGGAAAAGGATTGTTCTGGGAGCCATT
CTTCTTGCCTCCAAGGTTTGGGATGATCAGGCTGTGTGGAACGTGGACTATTGCCAGATCCTCAAGGACATTACAGTTGA
GGACATGAATGAAATGGAAAGGCATTTTTTGGAGCTTCTTCAGTTTAATATTAATGTTCCTGCCAGTGTTTATGCCAAAT
ACTACTTTGACCTTCGCTCCTTAGCAGATGACAACAACCTGAATTTTCTATTTGCTCCTCTTAGCAAAGAAAGAGCACAG
AACCTAGAGGCTATTTCTAGATTGTGTGAAGACAAAGACTTGTGTAGAGCCGCTATGAGAAGGTCTTTCAGCGCTGATAA
CTTCATTGGTATTCAGCGCTCTAAAGCCATCCTCTCTTAA
ATGGGGAACACGCTGACCTGTTGCGTGTCCCCCAATGCCAGCCCCAAGCTGGGCCGGCGCGCGGGGTCGGCGGAGCTGTA
CTGCGCTTCCGACATCTACGAGGCGGCGTCGGGAGACGCGGTGGCGGTAGCGCCCGCTGCTGTGGAGCCTGCTGAGTTGG
ATTTTGGAGAGGGCGAGGGCCACCACCTGCAGCACATCAGCGACCGCGAGATGCCCGAAGATTTAGCTTTGGAGTCAAAC
CCTTCTGACCATCCAAGGGCAAGCACAATTTTCCTGAGCAAATCTCAAACAGATGTGCGAGAAAAGAGGAAGAGCAACCA
TTTAAACCATGTATCTCCAGGGCAGCTTACTAAAAAGTATAGCTCATGCTCAACAATATTTCTAGATGACAGCACAGTCA
GCCAGCCTAATCTTAGAACCACAGTAAAATGTGTGACCTTAGCAATATATTACCACATAAAGAACAGAGATGCAAATAGA
TCCCTGGATATTTTTGATGAGAGATCACATCCACTTACACGAGAAAAAGTTCCAGAGGAATACTTTAAGCATGATCCTGA
GCACAAATTTATTTACAGATTTGTTCGTACTCTTTTTAGTGCTGCACAGCTAACAGCTGAATGTGCAATAGTAACTTTGG
TTTATTTAGAAAGGCTCTTAACTTATGCTGAAATCGACATCTGTCCCACTAATTGGAAAAGGATTGTTCTGGGAGCCATT
CTTCTTGCCTCCAAGGTTTGGGATGATCAGGCTGTGTGGAACGTGGACTATTGCCAGATCCTCAAGGACATTACAGTTGA
GGACATGAATGAAATGGAAAGGCATTTTTTGGAGCTTCTTCAGTTTAATATTAATGTTCCTGCCAGTGTTTATGCCAAAT
ACTACTTTGACCTTCGCTCCTTAGCAGATGACAACAACCTGAATTTTCTATTTGCTCCTCTTAGCAAAGAAAGAGCACAG
AACCTAGAGGCTATTTCTAGATTGTGTGAAGACAAAGACTTGTGTAGAGCCGCTATGAGAAGGTCTTTCAGCGCTGATAA
CTTCATTGGTATTCAGCGCTCTAAAGCCATCCTCTCTTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 9 .39 RPM |
| SRP051959_skeletal_muscle | 4 .30 RPM |
| SRP051959_lymph_node | 7 .33 RPM |
| SRP051959_lung | 6 .54 RPM |
| SRP051959_liver | 4 .68 RPM |
| SRP051959_kidney | 6 .99 RPM |
| SRP051959_heart | 5 .46 RPM |
| SRP051959_colon | 16 .84 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Callithrix jacchus | ENSCJAG00000001008 | within_species_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000011445 | within_species_paralog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000034702 | within_species_paralog | 1 retrogene | |
| Homo sapiens | ENSG00000163249 | possible_ortholog | 3 retrogenes | |
| Macaca mulatta | ENSMMUG00000020211 | ortholog_many2many | 1 retrogene | |
| Mus musculus | ENSMUSG00000070871 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000007131 | ortholog_one2many | 3 retrogenes | |
| Pongo abelii | ENSPPYG00000013118 | ortholog_many2many | 3 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_569 | 89.00 | 56.82 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000002901 retrocopies