Parental gene:

ENSCJAG00000002901

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:6:123672183..123718879(+)


>ENSCJAG00000002901
ATGGGGAACACGCTGACCTGTTGCGTGTCCCCCAATGCCAGCCCCAAGCTGGGCCGGCGCGCGGGGTCGGCGGAGCTGTA
CTGCGCTTCCGACATCTACGAGGCGGCGTCGGGAGACGCGGTGGCGGTAGCGCCCGCTGCTGTGGAGCCTGCTGAGTTGG
ATTTTGGAGAGGGCGAGGGCCACCACCTGCAGCACATCAGCGACCGCGAGATGCCCGAAGATTTAGCTTTGGAGTCAAAC
CCTTCTGACCATCCAAGGGCAAGCACAATTTTCCTGAGCAAATCTCAAACAGATGTGCGAGAAAAGAGGAAGAGCAACCA
TTTAAACCATGTATCTCCAGGGCAGCTTACTAAAAAGTATAGCTCATGCTCAACAATATTTCTAGATGACAGCACAGTCA
GCCAGCCTAATCTTAGAACCACAGTAAAATGTGTGACCTTAGCAATATATTACCACATAAAGAACAGAGATGCAAATAGA
TCCCTGGATATTTTTGATGAGAGATCACATCCACTTACACGAGAAAAAGTTCCAGAGGAATACTTTAAGCATGATCCTGA
GCACAAATTTATTTACAGATTTGTTCGTACTCTTTTTAGTGCTGCACAGCTAACAGCTGAATGTGCAATAGTAACTTTGG
TTTATTTAGAAAGGCTCTTAACTTATGCTGAAATCGACATCTGTCCCACTAATTGGAAAAGGATTGTTCTGGGAGCCATT
CTTCTTGCCTCCAAGGTTTGGGATGATCAGGCTGTGTGGAACGTGGACTATTGCCAGATCCTCAAGGACATTACAGTTGA
GGACATGAATGAAATGGAAAGGCATTTTTTGGAGCTTCTTCAGTTTAATATTAATGTTCCTGCCAGTGTTTATGCCAAAT
ACTACTTTGACCTTCGCTCCTTAGCAGATGACAACAACCTGAATTTTCTATTTGCTCCTCTTAGCAAAGAAAGAGCACAG
AACCTAGAGGCTATTTCTAGATTGTGTGAAGACAAAGACTTGTGTAGAGCCGCTATGAGAAGGTCTTTCAGCGCTGATAA
CTTCATTGGTATTCAGCGCTCTAAAGCCATCCTCTCTTAA

Library Parental gene expression (RPM)
SRP051959_colon 16 .84 RPM
SRP051959_heart 5 .46 RPM
SRP051959_kidney 6 .99 RPM
SRP051959_liver 4 .68 RPM
SRP051959_lung 6 .54 RPM
SRP051959_lymph_node 7 .33 RPM
SRP051959_skeletal_muscle 4 .30 RPM
SRP051959_spleen 9 .39 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000001008 within_species_paralog 1 retrogene
retro_cjac_3555,
Callithrix jacchus ENSCJAG00000011445 within_species_paralog 1 retrogene
retro_cjac_1164,
Callithrix jacchus ENSCJAG00000034702 within_species_paralog 1 retrogene
retro_cjac_610,
Homo sapiens ENSG00000163249 possible_ortholog 3 retrogenes
retro_hsap_1629, retro_hsap_1984, retro_hsap_4845,
Macaca mulatta ENSMMUG00000020211 ortholog_many2many 1 retrogene
retro_mmul_2587,
Mus musculus ENSMUSG00000070871 possible_ortholog 1 retrogene
retro_mmus_3072,
Nomascus leucogenys ENSNLEG00000007131 ortholog_one2many 3 retrogenes
retro_nleu_1164, retro_nleu_2902, retro_nleu_430,
Pongo abelii ENSPPYG00000013118 ortholog_many2many 3 retrogenes
retro_pabe_1345, retro_pabe_3766, retro_pabe_76,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_569 89.00 56.82
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Download FASTA sequences of all ENSCJAG00000002901 retrocopies