Parental gene:

ENSCJAG00000003319

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:1:90105104..90140123(-)


>ENSCJAG00000003319
ATGGACGCCCCGAGGCAGGTGGTCAACTTCGGACCTGGTCCCGCCAAGCTGCCACACTCACAGAGGTGTGTTGAGATACA
AAAGGAATTATTAGACTACAAAGGAGTTGGCATTAGTGTCCTTGAAATGAGTCACAGATCATCAGATTTTGCCAAGATTA
TTAACAATACAGAGAATCTCGTGCGGGAATTGCTAGCCGTTCCAGACAACTATAAGGTGATTTTTGTGCAAGGAGGTGGG
TCCGGCCAGTTCAGTGCTGTCCCCTTAAACCTGATTGGCTTGAAAGCAGGAAGATGTGCGGACTATGTGGTGACAGGATC
TTGGTCAGCTAAGGCTGCAGAAGAAGCCAAGAAGTTTGGGACTATAAATATCGTTCACCCTAAACTTGGGAGTTACACAA
AAATTCCAGATCCAAGCACCTGGAACCTCAACCCGGATGCCTCCTACGTGTATTATTGCGCAAATGAGACGGTGCATGGT
GTTGAGTTTGACTTTATACCTGACGTCAAGGGAGTAGTACTGGTTTGTGACATGTCCTCAAACTTCCTTTCCAAGCCAGT
GGATGTTTCTAAGTTTGGTGTGATTTTTGCTGGTGCCCAGAAGAATGTTGGCTCTGCTGGGGTCACCGTGGTGATTGTCC
GTGATGACCTGCTGGGGTTTGCCCTCCGAGAGTGCCCCTCAGTCCTGGAGTACAAGGTGCAGGCTGGAAACAACTCCTTG
TACAACACGCCTCCATGTTTCAGCATCTACGTTATGGGCTTGGTCCTGGAGTGGATTAAAAACAATGGAGGTGCCGTGGC
CATGGAGAAGCTTAGCTCCATCAAATCCCAAATGATTTATGAGATTATTGATAATTCTCAAGGATTCTATGTATGTCCAG
TGGAGCCGCAGAATAGAAGCAAGATGAATATTCCATTCCGCATTGGCAATGCCAAAGGAGATGATGCTTTAGAAAAAAGA
TTTCTCGATAAAGCTCTTGAACTCAATATGTTATCTTTGAAAGGGCATAGGTCTGTGGGAGGCATCCGGGCCTCTCTGTA
TAATGCTGTCACGATTGAAGATGTTCAGAAGCTGGCCACCTTCATGAAAAATTTTTTGGAGATGCATCAGCTATGA

Library Parental gene expression (RPM)
SRP051959_spleen 1 .60 RPM
SRP051959_skeletal_muscle 0 .24 RPM
SRP051959_lymph_node 3 .04 RPM
SRP051959_lung 0 .75 RPM
SRP051959_liver 0 .78 RPM
SRP051959_kidney 0 .91 RPM
SRP051959_heart 0 .44 RPM
SRP051959_colon 3 .15 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000006898 ortholog_many2many 1 retrogene
retro_amel_375,
Bos taurus ENSBTAG00000013960 ortholog_one2many 1 retrogene
retro_btau_1658,
Canis familiaris ENSCAFG00000001570 ortholog_one2many 1 retrogene
retro_cfam_269,
Choloepus hoffmanni ENSCHOG00000003817 ortholog_one2many 1 retrogene
retro_chof_2702,
Echinops telfairi ENSETEG00000004158 ortholog_one2many 1 retrogene
retro_etel_99,
Homo sapiens ENSG00000135069 ortholog_one2many 3 retrogenes
retro_hsap_2267, retro_hsap_4054, retro_hsap_412,
Gorilla gorilla ENSGGOG00000015480 ortholog_one2many 1 retrogene
retro_ggor_407,
Loxodonta africana ENSLAFG00000017917 ortholog_one2many 2 retrogenes
retro_lafr_1249, retro_lafr_660,
Macaca mulatta ENSMMUG00000011868 ortholog_many2many 2 retrogenes
retro_mmul_1029, retro_mmul_2341,
Mustela putorius furo ENSMPUG00000012566 ortholog_one2many 1 retrogene
retro_mputfur_808,
Nomascus leucogenys ENSNLEG00000002989 ortholog_one2many 3 retrogenes
retro_nleu_1010, retro_nleu_1288, retro_nleu_2805,
Oryctolagus cuniculus ENSOCUG00000007765 ortholog_one2many 1 retrogene
retro_ocun_1092,
Pongo abelii ENSPPYG00000019313 ortholog_one2many 3 retrogenes
retro_pabe_1950, retro_pabe_308, retro_pabe_3328,
Pan troglodytes ENSPTRG00000021045 ortholog_one2many 2 retrogenes
retro_ptro_1606, retro_ptro_316,
Rattus norvegicus ENSRNOG00000013971 ortholog_one2many 1 retrogene
retro_rnor_1663,
Tupaia belangeri ENSTBEG00000012946 ortholog_one2many 1 retrogene
retro_tbel_1577,
Tarsius syrichta ENSTSYG00000000093 ortholog_one2many 2 retrogenes
retro_tsyr_1073, retro_tsyr_1212,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_1203 59.70 53.10
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Download FASTA sequences of all ENSCJAG00000003319 retrocopies