Parental gene: | SUGT1, ENSCJAG00000003604 |
| Aliases: | None |
| Description: | None |
| Organism: | Marmoset (Callithrix jacchus) |
| Coordinates: | 1:62350594..62388787(-) |
>ENSCJAG00000003604
ATGGCGGCGGCTGCAGCAGGACCTGCAACATCCCGGAGATTTTTCCAGAGCTTCTCGGATGCTCTAATCGACGAGGACCC
CCAGGCGGCGTTAGAGGAGCTGACTAAGGCTTTGGAACAGAAACCAGATGATGCACAGTATTATTGTCAAAGAGCTTATT
GCCACATTCTTCTTGGGAATTACTGTGTTGCTGTTGCTGATGCAAAGAAGTCTCTCGAACTCAATCCAAATAATTCCACT
GCTATGTTGAGAAAAGGAATATGTGAATACCATGAAAAAAACTATGCTGCTGCTCTAGAAACTTTTATAGAAGGACAAAA
ATTAGATACCTTTTGGCATTTGAATTACCATAAACTTTACCATTACAAGATAGAGCTTTATCACAATTCTCTTTCTCCCT
TTTTTTTGAGACAATCTTGCTCTGTTGTTGGTGCAGATGCTAATTTCAGTGTCTGGATTAAAAGGTGTCAAGAAGCTCAG
AATGGCTCAGAATCTGAGGTGTGGATTCATCAGTCAAAAATCAAGTATGACTGGTATCAAACAGAATCTCAAGTAGTCAT
TACGCTTATGATCAAGAATGTTCAGAAGAATGACGTAAATGTGGAATTTTCAGAAAAACAGTTGTCTGCTTTGGTTAAAC
TTCCTTCTGGAGAGGATTACAATTTGAAACTGGAACTTCTTCATCCTATAATACCAGAACAGAGCACATTTAAAGTACTT
TCAACAAAGATTGAAATTAAACTGAAAAAGCCAGAGGCTGTGAGATGGGAAAAGCTAGAGGGGCAAGGAGATGTGCCTAC
GCCAAAACAATTCATAGCAGATGTAAAGAACCTATATCCATCATCATCTCCTTATACAAGAAATTGGGATAAATTGGTTG
GTGAGATAAAAGAAGAAGAAAAGAATGAAAAGTTGGAGGGAGATGCAGCCTTAAACAAATTATTTCAGCAGATCTATTCA
GATGGTTCTGATGAAGTGAAACGTGCCATGAACAAATCCTTTATGGAGTCTGGTGGTACAGTTTTGAGTACCAACTGGTC
TGATGTAGGTAAAAGGAAAGTTGAAATCAATCCTCCTGATGATATGGAATGGAAAAAGTACTAA
ATGGCGGCGGCTGCAGCAGGACCTGCAACATCCCGGAGATTTTTCCAGAGCTTCTCGGATGCTCTAATCGACGAGGACCC
CCAGGCGGCGTTAGAGGAGCTGACTAAGGCTTTGGAACAGAAACCAGATGATGCACAGTATTATTGTCAAAGAGCTTATT
GCCACATTCTTCTTGGGAATTACTGTGTTGCTGTTGCTGATGCAAAGAAGTCTCTCGAACTCAATCCAAATAATTCCACT
GCTATGTTGAGAAAAGGAATATGTGAATACCATGAAAAAAACTATGCTGCTGCTCTAGAAACTTTTATAGAAGGACAAAA
ATTAGATACCTTTTGGCATTTGAATTACCATAAACTTTACCATTACAAGATAGAGCTTTATCACAATTCTCTTTCTCCCT
TTTTTTTGAGACAATCTTGCTCTGTTGTTGGTGCAGATGCTAATTTCAGTGTCTGGATTAAAAGGTGTCAAGAAGCTCAG
AATGGCTCAGAATCTGAGGTGTGGATTCATCAGTCAAAAATCAAGTATGACTGGTATCAAACAGAATCTCAAGTAGTCAT
TACGCTTATGATCAAGAATGTTCAGAAGAATGACGTAAATGTGGAATTTTCAGAAAAACAGTTGTCTGCTTTGGTTAAAC
TTCCTTCTGGAGAGGATTACAATTTGAAACTGGAACTTCTTCATCCTATAATACCAGAACAGAGCACATTTAAAGTACTT
TCAACAAAGATTGAAATTAAACTGAAAAAGCCAGAGGCTGTGAGATGGGAAAAGCTAGAGGGGCAAGGAGATGTGCCTAC
GCCAAAACAATTCATAGCAGATGTAAAGAACCTATATCCATCATCATCTCCTTATACAAGAAATTGGGATAAATTGGTTG
GTGAGATAAAAGAAGAAGAAAAGAATGAAAAGTTGGAGGGAGATGCAGCCTTAAACAAATTATTTCAGCAGATCTATTCA
GATGGTTCTGATGAAGTGAAACGTGCCATGAACAAATCCTTTATGGAGTCTGGTGGTACAGTTTTGAGTACCAACTGGTC
TGATGTAGGTAAAAGGAAAGTTGAAATCAATCCTCCTGATGATATGGAATGGAAAAAGTACTAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP051959_spleen | 27 .46 RPM |
| SRP051959_skeletal_muscle | 19 .22 RPM |
| SRP051959_lymph_node | 27 .03 RPM |
| SRP051959_lung | 24 .71 RPM |
| SRP051959_liver | 20 .88 RPM |
| SRP051959_kidney | 21 .65 RPM |
| SRP051959_heart | 21 .00 RPM |
| SRP051959_colon | 20 .79 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Ailuropoda melanoleuca | ENSAMEG00000008606 | ortholog_one2many | 2 retrogenes | |
| Canis familiaris | ENSCAFG00000004823 | ortholog_many2many | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000003374 | ortholog_many2many | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000002991 | ortholog_one2many | 1 retrogene | |
| Homo sapiens | ENSG00000165416 | ortholog_one2many | 1 retrogene | |
| Gorilla gorilla | ENSGGOG00000006797 | ortholog_one2many | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000015700 | ortholog_one2many | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000008220 | ortholog_many2many | 1 retrogene | |
| Pan troglodytes | ENSPTRG00000005906 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cjac_310 | 98.80 | 100.00 | Please wait, loading  | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCJAG00000003604 retrocopies